RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 HTRA3P83110 453 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 KCNMA1Q12791 1236 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 SPP2Q13103 211 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 CUL4AQ13619 759 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 NCOA4Q13772 614 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 BECN1Q14457 450 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 GRM4Q14833 912 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 ANKRD1Q15327 319 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 RTN1Q16799 776 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 ARSJQ5FYB0 599 aaPredicted RBP6.07□□□□□ -1.44
SPG11-220ENST00000559933 NOL9Q5SY16 702 aaKnown RBP6.07□□□□□ -1.44
SPG11-220ENST00000559933 FAM83BQ5T0W9 1011 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 OTUD7BQ6GQQ9 843 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 FIGNL1Q6PIW4 674 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 CATIPQ7Z7H3 387 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 DGKHQ86XP1 1220 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 FBXL16Q8N461 479 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 SRBD1Q8N5C6 995 aaKnown RBP6.07□□□□□ -1.44
SPG11-220ENST00000559933 NSUN7Q8NE18 718 aaKnown RBP6.07□□□□□ -1.44
SPG11-220ENST00000559933 FOXD4L4Q8WXT5 416 aaPredicted RBP6.07□□□□□ -1.44
SPG11-220ENST00000559933 SHISA4Q96DD7 197 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 CHAMP1Q96JM3 812 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 CCDC17Q96LX7 622 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 FEZ1Q99689 392 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 GBA2Q9HCG7 927 aaPredicted RBP6.07□□□□□ -1.44
SPG11-220ENST00000559933 NID2Q14112 1375 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 LOC285556D6RIA3 1793 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 PASKQ96RG2 1323 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 BAZ2BQ9UIF8 2168 aaKnown RBP6.06□□□□□ -1.44
SPG11-220ENST00000559933 F5H6K3 240 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 ADAMTS3O15072 1205 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 CYTH3O43739 400 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 PPP1R12BO60237 982 aaPredicted RBP6.06□□□□□ -1.44
SPG11-220ENST00000559933 DDAH1O94760 285 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 ARHGEF15O94989 841 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 VCAM1P19320 739 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 GJB2P29033 226 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 ATP1A2P50993 1020 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 GUCY1B3Q02153 619 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 KLRC3Q07444 240 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 TREML2Q5T2D2 321 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 SLFN13Q68D06 897 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 TMTC3Q6ZXV5 915 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 DEPDC4Q8N2C3 294 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 FANCBQ8NB91 859 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 ANKS1AQ92625 1134 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 OPTNQ96CV9 577 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 ZNF274Q96GC6 653 aaPredicted RBP6.06□□□□□ -1.44
SPG11-220ENST00000559933 WNK4Q96J92 1243 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 SLC26A6Q9BXS9 759 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 KANSL2Q9H9L4 492 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 VAT1LQ9HCJ6 419 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 PICK1Q9NRD5 415 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 FBXO28Q9NVF7 368 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 NYAP2Q9P242 653 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 ATXN7L1Q9ULK2 861 aaPredicted RBP6.06□□□□□ -1.44
SPG11-220ENST00000559933 PCDHGA11Q9Y5H2 935 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 CSADQ9Y600 493 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 ZHX2Q9Y6X8 837 aa6.06□□□□□ -1.44
SPG11-220ENST00000559933 PARP14Q460N5 1801 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 PALM3A6NDB9 673 aaPredicted RBP6.05□□□□□ -1.44
SPG11-220ENST00000559933 POM121CA8CG34 1229 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 TMEM229AB2RXF0 380 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 USP17L10C9JJH3 530 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 PPP1R11O60927 126 aaPredicted RBP6.05□□□□□ -1.44
SPG11-220ENST00000559933 HSP90AA1P07900 732 aaKnown RBP6.05□□□□□ -1.44
SPG11-220ENST00000559933 ASNSP08243 561 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 SNHG28P0DPA3 235 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 BMP4P12644 408 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 FDPSP14324 419 aaKnown RBP6.05□□□□□ -1.44
SPG11-220ENST00000559933 IRS1P35568 1242 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 SLC1A4P43007 532 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 MCM2P49736 904 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 ZNF543Q08ER8 600 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 GRM1Q13255 1194 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 NTRK3Q16288 839 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 MAP3K11Q16584 847 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 LDLRAD1Q5T700 205 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 SYNE3Q6ZMZ3 975 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 GADL1Q6ZQY3 521 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 ARMC9Q7Z3E5 817 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 HOMER1Q86YM7 354 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 ANKRD13AQ8IZ07 590 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 ZNF280CQ8ND82 737 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 GMCL1P1Q8NEA9 526 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 CTCFLQ8NI51 663 aaPredicted RBP6.05□□□□□ -1.44
SPG11-220ENST00000559933 SMARCC2Q8TAQ2 1214 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 HOOK2Q96ED9 719 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 ZSCAN31Q96LW9 406 aaPredicted RBP6.05□□□□□ -1.44
SPG11-220ENST00000559933 OXCT2Q9BYC2 517 aaPredicted RBP6.05□□□□□ -1.44
SPG11-220ENST00000559933 CRISPLD1Q9H336 500 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 VCPKMTQ9H867 229 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 SH2B1Q9NRF2 756 aaPredicted RBP6.05□□□□□ -1.44
SPG11-220ENST00000559933 TMX2Q9Y320 296 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 AFG3L2Q9Y4W6 797 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 MYH6P13533 1939 aa6.05□□□□□ -1.44
SPG11-220ENST00000559933 RLFQ13129 1914 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 TMEM232C9JQI7 657 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 KLRF2D3W0D1 207 aa6.04□□□□□ -1.44
SPG11-220ENST00000559933 CPLX1O14810 134 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms