RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 NKX3-2P78367 333 aa4.66□□□□□ -1.66
VPS13C-205ENST00000558088 MROH9Q5TGP6 573 aa4.66□□□□□ -1.66
VPS13C-205ENST00000558088 MILR1Q7Z6M3 343 aa4.66□□□□□ -1.66
VPS13C-205ENST00000558088 TEX2Q8IWB9 1127 aa4.66□□□□□ -1.66
VPS13C-205ENST00000558088 BVESQ8NE79 360 aa4.66□□□□□ -1.66
VPS13C-205ENST00000558088 PLEKHO2Q8TD55 490 aa4.66□□□□□ -1.66
VPS13C-205ENST00000558088 KLHL6Q8WZ60 621 aa4.66□□□□□ -1.66
VPS13C-205ENST00000558088 C1QTNF3Q9BXJ4 246 aa4.66□□□□□ -1.66
VPS13C-205ENST00000558088 EMC9Q9Y3B6 208 aa4.66□□□□□ -1.66
VPS13C-205ENST00000558088 C9orf118A6NHY6 69 aa4.65□□□□□ -1.67
VPS13C-205ENST00000558088 AKAP8O43823 692 aaKnown RBP4.65□□□□□ -1.67
VPS13C-205ENST00000558088 CYP7B1O75881 506 aa4.65□□□□□ -1.67
VPS13C-205ENST00000558088 CYP1A1P04798 512 aaPredicted RBP4.65□□□□□ -1.67
VPS13C-205ENST00000558088 GTF2A2P52657 109 aa4.65□□□□□ -1.67
VPS13C-205ENST00000558088 ZNF143P52747 638 aaPredicted RBP4.65□□□□□ -1.67
VPS13C-205ENST00000558088 ITGA1P56199 1179 aa4.65□□□□□ -1.67
VPS13C-205ENST00000558088 NCAPHQ15003 741 aa4.65□□□□□ -1.67
VPS13C-205ENST00000558088 CHRNA2Q15822 529 aa4.65□□□□□ -1.67
VPS13C-205ENST00000558088 TMCO4Q5TGY1 634 aa4.65□□□□□ -1.67
VPS13C-205ENST00000558088 C9orf131Q5VYM1 1079 aa4.65□□□□□ -1.67
VPS13C-205ENST00000558088 FAM126BQ8IXS8 530 aa4.65□□□□□ -1.67
VPS13C-205ENST00000558088 TXNDC5Q8NBS9 432 aaKnown RBP4.65□□□□□ -1.67
VPS13C-205ENST00000558088 RASGRP4Q8TDF6 673 aa4.65□□□□□ -1.67
VPS13C-205ENST00000558088 COPS5Q92905 334 aa4.65□□□□□ -1.67
VPS13C-205ENST00000558088 GPRC5CQ9NQ84 441 aa4.65□□□□□ -1.67
VPS13C-205ENST00000558088 COA3Q9Y2R0 106 aaPredicted RBP4.65□□□□□ -1.67
VPS13C-205ENST00000558088 DDX3XO00571 662 aaKnown RBP eCLIP4.64□□□□□ -1.67
VPS13C-205ENST00000558088 SGSM2O43147 1006 aa4.64□□□□□ -1.67
VPS13C-205ENST00000558088 LAMTOR5O43504 91 aa4.64□□□□□ -1.67
VPS13C-205ENST00000558088 FSHBP01225 129 aa4.64□□□□□ -1.67
VPS13C-205ENST00000558088 NASPP49321 788 aaPredicted RBP4.64□□□□□ -1.67
VPS13C-205ENST00000558088 CASP7P55210 303 aa4.64□□□□□ -1.67
VPS13C-205ENST00000558088 MBLAC2Q68D91 279 aa4.64□□□□□ -1.67
VPS13C-205ENST00000558088 GTF2IRD2BQ6EKJ0 949 aa4.64□□□□□ -1.67
VPS13C-205ENST00000558088 GTF2IRD2Q86UP8 949 aa4.64□□□□□ -1.67
VPS13C-205ENST00000558088 STK32CQ86UX6 486 aa4.64□□□□□ -1.67
VPS13C-205ENST00000558088 RIOX2Q8IUF8 465 aa4.64□□□□□ -1.67
VPS13C-205ENST00000558088 FAM26EQ8N5C1 309 aa4.64□□□□□ -1.67
VPS13C-205ENST00000558088 TRMT2BQ96GJ1 504 aaKnown RBP4.64□□□□□ -1.67
VPS13C-205ENST00000558088 CLIC6Q96NY7 704 aa4.64□□□□□ -1.67
VPS13C-205ENST00000558088 WRNIP1Q96S55 665 aa4.64□□□□□ -1.67
VPS13C-205ENST00000558088 CDK5RAP1Q96SZ6 601 aaKnown RBP4.64□□□□□ -1.67
VPS13C-205ENST00000558088 L2HGDHQ9H9P8 463 aa4.64□□□□□ -1.67
VPS13C-205ENST00000558088 CYP26B1Q9NR63 512 aa4.64□□□□□ -1.67
VPS13C-205ENST00000558088 APEX2Q9UBZ4 518 aa4.64□□□□□ -1.67
VPS13C-205ENST00000558088 TIMM13Q9Y5L4 95 aaPredicted RBP4.64□□□□□ -1.67
VPS13C-205ENST00000558088 STAT5AP42229 794 aa4.63□□□□□ -1.67
VPS13C-205ENST00000558088 GDF5P43026 501 aa4.63□□□□□ -1.67
VPS13C-205ENST00000558088 KCNAB2Q13303 367 aa4.63□□□□□ -1.67
VPS13C-205ENST00000558088 E4F1Q66K89 784 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-205ENST00000558088 USP51Q70EK9 711 aa4.63□□□□□ -1.67
VPS13C-205ENST00000558088 CEP68Q76N32 757 aa4.63□□□□□ -1.67
VPS13C-205ENST00000558088 TRIM59Q8IWR1 403 aa4.63□□□□□ -1.67
VPS13C-205ENST00000558088 DPF3Q92784 378 aa4.63□□□□□ -1.67
VPS13C-205ENST00000558088 DIO2Q92813 273 aa4.63□□□□□ -1.67
VPS13C-205ENST00000558088 TMEM169Q96HH4 297 aa4.63□□□□□ -1.67
VPS13C-205ENST00000558088 NKX2-4Q9H2Z4 354 aa4.63□□□□□ -1.67
VPS13C-205ENST00000558088 JADE2Q9NQC1 790 aa4.63□□□□□ -1.67
VPS13C-205ENST00000558088 ST6GALNAC2Q9UJ37 374 aa4.63□□□□□ -1.67
VPS13C-205ENST00000558088 STRIP2Q9ULQ0 834 aa4.63□□□□□ -1.67
VPS13C-205ENST00000558088 NPEPPSL1A6NEC2 478 aa4.62□□□□□ -1.67
VPS13C-205ENST00000558088 SUV39H1O43463 412 aa4.62□□□□□ -1.67
VPS13C-205ENST00000558088 C6P13671 934 aa4.62□□□□□ -1.67
VPS13C-205ENST00000558088 FPR2P25090 351 aa4.62□□□□□ -1.67
VPS13C-205ENST00000558088 LIMS2Q7Z4I7 341 aa4.62□□□□□ -1.67
VPS13C-205ENST00000558088 SLC16A11Q8NCK7 471 aa4.62□□□□□ -1.67
VPS13C-205ENST00000558088 SH3RF3Q8TEJ3 882 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-205ENST00000558088 SHDQ96IW2 340 aa4.62□□□□□ -1.67
VPS13C-205ENST00000558088 SYT3Q9BQG1 590 aa4.62□□□□□ -1.67
VPS13C-205ENST00000558088 KRTAP3-1Q9BYR8 98 aa4.62□□□□□ -1.67
VPS13C-205ENST00000558088 TMEM168Q9H0V1 697 aa4.62□□□□□ -1.67
VPS13C-205ENST00000558088 LRP2BPQ9P2M1 347 aa4.62□□□□□ -1.67
VPS13C-205ENST00000558088 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.62□□□□□ -1.67
VPS13C-205ENST00000558088 HGSO14964 777 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-205ENST00000558088 MEFVO15553 781 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-205ENST00000558088 TACR2P21452 398 aa4.61□□□□□ -1.67
VPS13C-205ENST00000558088 INF2Q27J81 1249 aa4.61□□□□□ -1.67
VPS13C-205ENST00000558088 CIR1Q86X95 450 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-205ENST00000558088 ZNF513Q8N8E2 541 aaPredicted RBP4.61□□□□□ -1.67
VPS13C-205ENST00000558088 FRS2Q8WU20 508 aa4.61□□□□□ -1.67
VPS13C-205ENST00000558088 ANAPC16Q96DE5 110 aa4.61□□□□□ -1.67
VPS13C-205ENST00000558088 TOE1Q96GM8 510 aaKnown RBP4.61□□□□□ -1.67
VPS13C-205ENST00000558088 SEC16BQ96JE7 1060 aa4.61□□□□□ -1.67
VPS13C-205ENST00000558088 CHAMP1Q96JM3 812 aa4.61□□□□□ -1.67
VPS13C-205ENST00000558088 DEF6Q9H4E7 631 aa4.61□□□□□ -1.67
VPS13C-205ENST00000558088 FTSJ1Q9UET6 329 aa4.61□□□□□ -1.67
VPS13C-205ENST00000558088 ZNF652Q9Y2D9 606 aa4.61□□□□□ -1.67
VPS13C-205ENST00000558088 TSC22D4Q9Y3Q8 395 aa4.61□□□□□ -1.67
VPS13C-205ENST00000558088 X6R8D5 127 aa4.61□□□□□ -1.67
VPS13C-205ENST00000558088 MAFKO60675 156 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 RECKO95980 971 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 SNRPB2P08579 225 aaKnown RBP4.6□□□□□ -1.67
VPS13C-205ENST00000558088 ZNF28P17035 718 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 VAMP1P23763 118 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 HOXC12P31275 282 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 BCL6P41182 706 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 GJA8P48165 433 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 HMGA2P52926 109 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 PRR31Q5SQ13 230 aa4.6□□□□□ -1.67
VPS13C-205ENST00000558088 ARHGEF18Q6ZSZ5 1173 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms