RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 PCNX4Q63HM2 1172 aa17■□□□□ 0.31
VIPAS39-210ENST00000557466 VSIG10LQ86VR7 867 aa17■□□□□ 0.31
VIPAS39-210ENST00000557466 BLIDQ8IZY5 108 aa17■□□□□ 0.31
VIPAS39-210ENST00000557466 BICD2Q8TD16 824 aa17■□□□□ 0.31
VIPAS39-210ENST00000557466 SNX21Q969T3 373 aa17■□□□□ 0.31
VIPAS39-210ENST00000557466 CRISPLD2Q9H0B8 497 aa17■□□□□ 0.31
VIPAS39-210ENST00000557466 EHMT1Q9H9B1 1298 aa17■□□□□ 0.31
VIPAS39-210ENST00000557466 FAM184BQ9ULE4 1060 aa17■□□□□ 0.31
VIPAS39-210ENST00000557466 RBM47A0AV96 593 aaKnown RBP16.99■□□□□ 0.31
VIPAS39-210ENST00000557466 K7ELQ4 463 aaPredicted RBP16.99■□□□□ 0.31
VIPAS39-210ENST00000557466 PTGS1P23219 599 aa16.99■□□□□ 0.31
VIPAS39-210ENST00000557466 CUL4AQ13619 759 aa16.99■□□□□ 0.31
VIPAS39-210ENST00000557466 GALNT17Q6IS24 598 aa16.99■□□□□ 0.31
VIPAS39-210ENST00000557466 SEPT14Q6ZU15 432 aa16.99■□□□□ 0.31
VIPAS39-210ENST00000557466 M0R2N6 131 aa16.98■□□□□ 0.31
VIPAS39-210ENST00000557466 EIF3JO75822 258 aaKnown RBP16.98■□□□□ 0.31
VIPAS39-210ENST00000557466 RGS20O76081 388 aa16.98■□□□□ 0.31
VIPAS39-210ENST00000557466 ARIH2O95376 493 aa16.98■□□□□ 0.31
VIPAS39-210ENST00000557466 RARBP10826 455 aa16.98■□□□□ 0.31
VIPAS39-210ENST00000557466 SMPD1P17405 629 aa16.98■□□□□ 0.31
VIPAS39-210ENST00000557466 EN2P19622 333 aaPredicted RBP16.98■□□□□ 0.31
VIPAS39-210ENST00000557466 SREBF1P36956 1147 aa16.98■□□□□ 0.31
VIPAS39-210ENST00000557466 TNFAIP2Q03169 654 aa16.98■□□□□ 0.31
VIPAS39-210ENST00000557466 GJC2Q5T442 439 aaPredicted RBP16.98■□□□□ 0.31
VIPAS39-210ENST00000557466 KRT40Q6A162 431 aa16.98■□□□□ 0.31
VIPAS39-210ENST00000557466 MCTP2Q6DN12 878 aa16.98■□□□□ 0.31
VIPAS39-210ENST00000557466 FAM184AQ8NB25 1140 aa16.98■□□□□ 0.31
VIPAS39-210ENST00000557466 SCFD2Q8WU76 684 aa16.98■□□□□ 0.31
VIPAS39-210ENST00000557466 OGDHLQ9ULD0 1010 aa16.98■□□□□ 0.31
VIPAS39-210ENST00000557466 SYNRGQ9UMZ2 1314 aa16.97■□□□□ 0.31
VIPAS39-210ENST00000557466 GUCY1B3Q02153 619 aa16.97■□□□□ 0.31
VIPAS39-210ENST00000557466 IQSEC1Q6DN90 963 aa16.97■□□□□ 0.31
VIPAS39-210ENST00000557466 XRRA1Q6P2D8 792 aa16.97■□□□□ 0.31
VIPAS39-210ENST00000557466 OXER1Q8TDS5 423 aa16.97■□□□□ 0.31
VIPAS39-210ENST00000557466 CRYGNQ8WXF5 182 aa16.97■□□□□ 0.31
VIPAS39-210ENST00000557466 C8orf76Q96K31 380 aa16.97■□□□□ 0.31
VIPAS39-210ENST00000557466 INPP4AQ96PE3 977 aaPredicted RBP16.97■□□□□ 0.31
VIPAS39-210ENST00000557466 WDR11Q9BZH6 1224 aa16.97■□□□□ 0.31
VIPAS39-210ENST00000557466 XPNPEP3Q9NQH7 507 aa16.97■□□□□ 0.31
VIPAS39-210ENST00000557466 RTEL1Q9NZ71 1219 aa16.97■□□□□ 0.31
VIPAS39-210ENST00000557466 GNEQ9Y223 722 aaKnown RBP16.97■□□□□ 0.31
VIPAS39-210ENST00000557466 CENPFP49454 3210 aa16.97■□□□□ 0.31
VIPAS39-210ENST00000557466 DUSP11O75319 330 aaKnown RBP16.96■□□□□ 0.31
VIPAS39-210ENST00000557466 STAM2O75886 525 aa16.96■□□□□ 0.31
VIPAS39-210ENST00000557466 PGK1P00558 417 aa16.96■□□□□ 0.31
VIPAS39-210ENST00000557466 TFRCP02786 760 aaKnown RBP16.96■□□□□ 0.31
VIPAS39-210ENST00000557466 MMP1P03956 469 aa16.96■□□□□ 0.31
VIPAS39-210ENST00000557466 GJB2P29033 226 aa16.96■□□□□ 0.31
VIPAS39-210ENST00000557466 ARHGAP4P98171 946 aa16.96■□□□□ 0.31
VIPAS39-210ENST00000557466 TRIM29Q14134 588 aa16.96■□□□□ 0.31
VIPAS39-210ENST00000557466 TTLL4Q14679 1199 aa16.96■□□□□ 0.31
VIPAS39-210ENST00000557466 DUSP28Q4G0W2 176 aa16.96■□□□□ 0.31
VIPAS39-210ENST00000557466 CCDC62Q6P9F0 684 aa16.96■□□□□ 0.31
VIPAS39-210ENST00000557466 HSCBQ8IWL3 235 aa16.96■□□□□ 0.31
VIPAS39-210ENST00000557466 SMC3Q9UQE7 1217 aa16.96■□□□□ 0.31
VIPAS39-210ENST00000557466 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.96■□□□□ 0.31
VIPAS39-210ENST00000557466 UBIAD1Q9Y5Z9 338 aa16.96■□□□□ 0.31
VIPAS39-210ENST00000557466 MYADML2A6NDP7 307 aa16.95■□□□□ 0.3
VIPAS39-210ENST00000557466 ADAMTS4O75173 837 aa16.95■□□□□ 0.3
VIPAS39-210ENST00000557466 TXNP10599 105 aaKnown RBP16.95■□□□□ 0.3
VIPAS39-210ENST00000557466 KRT2P35908 639 aa16.95■□□□□ 0.3
VIPAS39-210ENST00000557466 IRX5P78411 483 aaPredicted RBP16.95■□□□□ 0.3
VIPAS39-210ENST00000557466 SEMA3FQ13275 785 aa16.95■□□□□ 0.3
VIPAS39-210ENST00000557466 GNPTABQ3T906 1256 aa16.95■□□□□ 0.3
VIPAS39-210ENST00000557466 TLK2Q86UE8 772 aa16.95■□□□□ 0.3
VIPAS39-210ENST00000557466 COPS5Q92905 334 aa16.95■□□□□ 0.3
VIPAS39-210ENST00000557466 UPF3AQ9H1J1 476 aaKnown RBP16.95■□□□□ 0.3
VIPAS39-210ENST00000557466 MRVI1Q9Y6F6 885 aa16.95■□□□□ 0.3
VIPAS39-210ENST00000557466 FIBPO43427 364 aa16.94■□□□□ 0.3
VIPAS39-210ENST00000557466 ITGB5P18084 799 aa16.94■□□□□ 0.3
VIPAS39-210ENST00000557466 ICAM3P32942 547 aa16.94■□□□□ 0.3
VIPAS39-210ENST00000557466 MNX1P50219 401 aaPredicted RBP16.94■□□□□ 0.3
VIPAS39-210ENST00000557466 GJA9P57773 515 aa16.94■□□□□ 0.3
VIPAS39-210ENST00000557466 NR5A1Q13285 461 aa16.94■□□□□ 0.3
VIPAS39-210ENST00000557466 LRRC41Q15345 812 aa16.94■□□□□ 0.3
VIPAS39-210ENST00000557466 LY6KQ17RY6 165 aa16.94■□□□□ 0.3
VIPAS39-210ENST00000557466 KRT25Q7Z3Z0 450 aa16.94■□□□□ 0.3
VIPAS39-210ENST00000557466 DIS3L2Q8IYB7 885 aaKnown RBP16.94■□□□□ 0.3
VIPAS39-210ENST00000557466 TNFRSF25Q93038 417 aa16.94■□□□□ 0.3
VIPAS39-210ENST00000557466 BRMS1Q9HCU9 246 aa16.94■□□□□ 0.3
VIPAS39-210ENST00000557466 DDX41Q9UJV9 622 aaKnown RBP16.94■□□□□ 0.3
VIPAS39-210ENST00000557466 KIF3AQ9Y496 699 aa16.94■□□□□ 0.3
VIPAS39-210ENST00000557466 FAM205CA6NFA0 338 aa16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 BTBD18B2RXH4 712 aa16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 NKRFO15226 690 aaKnown RBP eCLIP16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 CTAGE5O15320 804 aa16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 EDIL3O43854 480 aa16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 FARP2O94887 1054 aaPredicted RBP16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 MYCNP04198 464 aaPredicted RBP16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 CYP3A4P08684 503 aa16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 UBA1P22314 1058 aaKnown RBP16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 NONOQ15233 471 aaKnown RBP eCLIP16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 EARS2Q5JPH6 523 aaKnown RBP16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 NLRX1Q86UT6 975 aa16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 ANKLE1Q8NAG6 615 aa16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 FBXO18Q8NFZ0 1043 aa16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 OR6J1Q8NGC5 347 aa16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 TBCKQ8TEA7 893 aa16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 DIS3LQ8TF46 1054 aaKnown RBP16.93■□□□□ 0.3
VIPAS39-210ENST00000557466 GPRASP2Q96D09 838 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms