RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 PTGISQ16647 500 aa12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 PPM1EQ8WY54 764 aa12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 MAD2L2Q9UI95 211 aa12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 DDX41Q9UJV9 622 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 U3KPZ7 1027 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-213ENST00000557455 ERICH2A1L162 156 aa12.87□□□□□ -0.35
CCDC88C-213ENST00000557455 PALM3A6NDB9 673 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-213ENST00000557455 IFIT3O14879 490 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-213ENST00000557455 ZBTB5O15062 677 aa12.87□□□□□ -0.35
CCDC88C-213ENST00000557455 CYP21A2P08686 494 aa12.87□□□□□ -0.35
CCDC88C-213ENST00000557455 IGFBP4P22692 258 aa12.87□□□□□ -0.35
CCDC88C-213ENST00000557455 DGKDQ16760 1214 aa12.87□□□□□ -0.35
CCDC88C-213ENST00000557455 CCDC155Q8N6L0 562 aa12.87□□□□□ -0.35
CCDC88C-213ENST00000557455 TET1Q8NFU7 2136 aa12.87□□□□□ -0.35
CCDC88C-213ENST00000557455 SYMPKQ92797 1274 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-213ENST00000557455 MTMR8Q96EF0 704 aa12.87□□□□□ -0.35
CCDC88C-213ENST00000557455 FTOQ9C0B1 505 aaKnown RBP eCLIP12.87□□□□□ -0.35
CCDC88C-213ENST00000557455 MAP3K20Q9NYL2 800 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-213ENST00000557455 PCDHA11Q9Y5I1 949 aa12.87□□□□□ -0.35
CCDC88C-213ENST00000557455 PCDHA1Q9Y5I3 950 aa12.87□□□□□ -0.35
CCDC88C-213ENST00000557455 MRVI1Q9Y6F6 885 aa12.87□□□□□ -0.35
CCDC88C-213ENST00000557455 OPLAHO14841 1288 aa12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 PPP1R11O60927 126 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 MYCLP12524 364 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 MYOGP15173 224 aa12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 CHMLP26374 656 aa12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 GHRHRQ02643 423 aa12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 PTH1RQ03431 593 aa12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 TRAF1Q13077 416 aa12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 LAMC2Q13753 1193 aa12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 ADGRE1Q14246 886 aa12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 WTAPQ15007 396 aa12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 SART3Q15020 963 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 PPP2R2DQ66LE6 453 aa12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 RALYLQ86SE5 291 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 SESTD1Q86VW0 696 aa12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 HOMER1Q86YM7 354 aa12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 DHX37Q8IY37 1157 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 SAMD3Q8N6K7 520 aa12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 NCOA7Q8NI08 942 aa12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 KAT2BQ92831 832 aa12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 EMID1Q96A84 441 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 PDCD2LQ9BRP1 358 aa12.86□□□□□ -0.35
CCDC88C-213ENST00000557455 E7EWF7 191 aa12.85□□□□□ -0.35
CCDC88C-213ENST00000557455 HOXA13P31271 388 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-213ENST00000557455 GRM4Q14833 912 aa12.85□□□□□ -0.35
CCDC88C-213ENST00000557455 CCDC85BQ15834 202 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-213ENST00000557455 TMEM67Q5HYA8 995 aa12.85□□□□□ -0.35
CCDC88C-213ENST00000557455 GDF6Q6KF10 455 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-213ENST00000557455 STOX1Q6ZVD7 989 aa12.85□□□□□ -0.35
CCDC88C-213ENST00000557455 C7orf31Q8N865 590 aa12.85□□□□□ -0.35
CCDC88C-213ENST00000557455 CAGE1Q8TC20 777 aa12.85□□□□□ -0.35
CCDC88C-213ENST00000557455 AFAP1L1Q8TED9 768 aa12.85□□□□□ -0.35
CCDC88C-213ENST00000557455 PIGSQ96S52 555 aa12.85□□□□□ -0.35
CCDC88C-213ENST00000557455 SLC9A7Q96T83 725 aa12.85□□□□□ -0.35
CCDC88C-213ENST00000557455 KATNAL1Q9BW62 490 aa12.85□□□□□ -0.35
CCDC88C-213ENST00000557455 RIOX1Q9H6W3 641 aa12.85□□□□□ -0.35
CCDC88C-213ENST00000557455 GTF2IRD1Q9UHL9 959 aa12.85□□□□□ -0.35
CCDC88C-213ENST00000557455 PTPRSQ13332 1948 aa12.85□□□□□ -0.35
CCDC88C-213ENST00000557455 CHD7Q9P2D1 2997 aa12.84□□□□□ -0.35
CCDC88C-213ENST00000557455 GCOM1H8Y6P7 765 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-213ENST00000557455 POLR2MP0CAP2 368 aa12.84□□□□□ -0.35
CCDC88C-213ENST00000557455 PSEN2P49810 448 aa12.84□□□□□ -0.35
CCDC88C-213ENST00000557455 IRX6P78412 446 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-213ENST00000557455 PGM5Q15124 567 aa12.84□□□□□ -0.35
CCDC88C-213ENST00000557455 TJAP1Q5JTD0 557 aa12.84□□□□□ -0.35
CCDC88C-213ENST00000557455 KCNV1Q6PIU1 500 aa12.84□□□□□ -0.35
CCDC88C-213ENST00000557455 VSIG10LQ86VR7 867 aa12.84□□□□□ -0.35
CCDC88C-213ENST00000557455 PPTC7Q8NI37 304 aa12.84□□□□□ -0.35
CCDC88C-213ENST00000557455 PHOSPHO2Q8TCD6 241 aa12.84□□□□□ -0.35
CCDC88C-213ENST00000557455 ALG1Q9BT22 464 aa12.84□□□□□ -0.35
CCDC88C-213ENST00000557455 SENP2Q9HC62 589 aa12.84□□□□□ -0.35
CCDC88C-213ENST00000557455 PRDM6Q9NQX0 595 aa12.84□□□□□ -0.35
CCDC88C-213ENST00000557455 HDAC6Q9UBN7 1215 aa12.84□□□□□ -0.35
CCDC88C-213ENST00000557455 DOCK5Q9H7D0 1870 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 PNMA6FA0A0J9YX94 578 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 KIF28PB7ZC32 967 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 SGSM2O43147 1006 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 SORBS3O60504 671 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 RGS20O76081 388 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 BAIAP3O94812 1187 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 CA3P07451 260 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 ZNF286BP0CG31 522 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 SELPP16109 830 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 CCND2P30279 289 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 TROAPQ12815 778 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 MFSD10Q14728 455 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 KIAA0753Q2KHM9 967 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 SLC35G1Q2M3R5 365 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 MYSM1Q5VVJ2 828 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 LRRC8DQ7L1W4 858 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 CATIPQ7Z7H3 387 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 FCHSD1Q86WN1 690 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 CTAGE1Q96RT6 745 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 THEGQ9P2T0 379 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 TAF6LQ9Y6J9 622 aa12.83□□□□□ -0.36
CCDC88C-213ENST00000557455 HAS3O00219 553 aa12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 CYTH3O43739 400 aa12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 PPFIA4O75335 1185 aa12.82□□□□□ -0.36
CCDC88C-213ENST00000557455 PARNO95453 639 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms