RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 NUCB1Q02818 461 aa21.36■■□□□ 1.01
VIPAS39-209ENST00000556909 STXBP2Q15833 593 aa21.36■■□□□ 1.01
VIPAS39-209ENST00000556909 GDF6Q6KF10 455 aaPredicted RBP21.36■■□□□ 1.01
VIPAS39-209ENST00000556909 CHST3Q7LGC8 479 aa21.36■■□□□ 1.01
VIPAS39-209ENST00000556909 FBXO11Q86XK2 927 aa21.36■■□□□ 1.01
VIPAS39-209ENST00000556909 HERC6Q8IVU3 1022 aa21.36■■□□□ 1.01
VIPAS39-209ENST00000556909 CCDC155Q8N6L0 562 aa21.36■■□□□ 1.01
VIPAS39-209ENST00000556909 CAGE1Q8TC20 777 aa21.36■■□□□ 1.01
VIPAS39-209ENST00000556909 UHRF1Q96T88 793 aaPredicted RBP21.36■■□□□ 1.01
VIPAS39-209ENST00000556909 DSCC1Q9BVC3 393 aa21.36■■□□□ 1.01
VIPAS39-209ENST00000556909 TSPYL2Q9H2G4 693 aaPredicted RBP21.36■■□□□ 1.01
VIPAS39-209ENST00000556909 JMJD4Q9H9V9 463 aa21.36■■□□□ 1.01
VIPAS39-209ENST00000556909 CERS4Q9HA82 394 aa21.36■■□□□ 1.01
VIPAS39-209ENST00000556909 MRPL11Q9Y3B7 192 aaKnown RBP21.36■■□□□ 1.01
VIPAS39-209ENST00000556909 EPOPA6NHQ4 379 aa21.35■■□□□ 1.01
VIPAS39-209ENST00000556909 DHX16O60231 1041 aaKnown RBP21.35■■□□□ 1.01
VIPAS39-209ENST00000556909 BAIAP3O94812 1187 aa21.35■■□□□ 1.01
VIPAS39-209ENST00000556909 ARHGEF15O94989 841 aa21.35■■□□□ 1.01
VIPAS39-209ENST00000556909 EIF2AK2P19525 551 aaKnown RBP21.35■■□□□ 1.01
VIPAS39-209ENST00000556909 IMMTQ16891 758 aaKnown RBP21.35■■□□□ 1.01
VIPAS39-209ENST00000556909 IL27Q8NEV9 243 aa21.35■■□□□ 1.01
VIPAS39-209ENST00000556909 AFAP1L1Q8TED9 768 aa21.35■■□□□ 1.01
VIPAS39-209ENST00000556909 HIP1O00291 1037 aa21.34■■□□□ 1.01
VIPAS39-209ENST00000556909 IGHDP01880 384 aa21.34■■□□□ 1.01
VIPAS39-209ENST00000556909 POU3F3P20264 500 aaPredicted RBP21.34■■□□□ 1.01
VIPAS39-209ENST00000556909 TAP1Q03518 808 aa21.34■■□□□ 1.01
VIPAS39-209ENST00000556909 ARHGEF16Q5VV41 709 aa21.34■■□□□ 1.01
VIPAS39-209ENST00000556909 DHX38Q92620 1227 aaKnown RBP21.34■■□□□ 1.01
VIPAS39-209ENST00000556909 EMID1Q96A84 441 aaPredicted RBP21.34■■□□□ 1.01
VIPAS39-209ENST00000556909 VAT1LQ9HCJ6 419 aa21.34■■□□□ 1.01
VIPAS39-209ENST00000556909 PXMP2Q9NR77 195 aa21.34■■□□□ 1.01
VIPAS39-209ENST00000556909 DDX41Q9UJV9 622 aaKnown RBP21.34■■□□□ 1.01
VIPAS39-209ENST00000556909 MTCH2Q9Y6C9 303 aa21.34■■□□□ 1.01
VIPAS39-209ENST00000556909 OPLAHO14841 1288 aa21.33■■□□□ 1.01
VIPAS39-209ENST00000556909 GTPBP6O43824 516 aaPredicted RBP21.33■■□□□ 1.01
VIPAS39-209ENST00000556909 CASTP20810 708 aaKnown RBP21.33■■□□□ 1.01
VIPAS39-209ENST00000556909 TFF2Q03403 129 aa21.33■■□□□ 1.01
VIPAS39-209ENST00000556909 RBL2Q08999 1139 aa21.33■■□□□ 1.01
VIPAS39-209ENST00000556909 GPNMBQ14956 572 aa21.33■■□□□ 1.01
VIPAS39-209ENST00000556909 DGKDQ16760 1214 aa21.33■■□□□ 1.01
VIPAS39-209ENST00000556909 ARNTL2Q8WYA1 636 aa21.33■■□□□ 1.01
VIPAS39-209ENST00000556909 UBAC1Q9BSL1 405 aa21.33■■□□□ 1.01
VIPAS39-209ENST00000556909 KRT23Q9C075 422 aa21.33■■□□□ 1.01
VIPAS39-209ENST00000556909 GTF2IRD1Q9UHL9 959 aa21.33■■□□□ 1.01
VIPAS39-209ENST00000556909 BAZ2BQ9UIF8 2168 aaKnown RBP21.33■■□□□ 1
VIPAS39-209ENST00000556909 EIF3JO75822 258 aaKnown RBP21.32■■□□□ 1
VIPAS39-209ENST00000556909 CFBP00751 764 aa21.32■■□□□ 1
VIPAS39-209ENST00000556909 SELPP16109 830 aa21.32■■□□□ 1
VIPAS39-209ENST00000556909 HSD17B4P51659 736 aa21.32■■□□□ 1
VIPAS39-209ENST00000556909 LRRC8DQ7L1W4 858 aa21.32■■□□□ 1
VIPAS39-209ENST00000556909 STAG2Q8N3U4 1231 aa21.32■■□□□ 1
VIPAS39-209ENST00000556909 CNNM2Q9H8M5 875 aa21.32■■□□□ 1
VIPAS39-209ENST00000556909 CTNNA3Q9UI47 895 aa21.32■■□□□ 1
VIPAS39-209ENST00000556909 MRVI1Q9Y6F6 885 aa21.32■■□□□ 1
VIPAS39-209ENST00000556909 SIP14410 1827 aa21.32■■□□□ 1
VIPAS39-209ENST00000556909 KIF28PB7ZC32 967 aa21.31■■□□□ 1
VIPAS39-209ENST00000556909 F2P00734 622 aa21.31■■□□□ 1
VIPAS39-209ENST00000556909 NR3C2P08235 984 aa21.31■■□□□ 1
VIPAS39-209ENST00000556909 ZNF286BP0CG31 522 aa21.31■■□□□ 1
VIPAS39-209ENST00000556909 KCNJ6P48051 423 aa21.31■■□□□ 1
VIPAS39-209ENST00000556909 PSEN2P49810 448 aa21.31■■□□□ 1
VIPAS39-209ENST00000556909 WDR5P61964 334 aaKnown RBP21.31■■□□□ 1
VIPAS39-209ENST00000556909 GHRHRQ02643 423 aa21.31■■□□□ 1
VIPAS39-209ENST00000556909 SKIV2LQ15477 1246 aaKnown RBP21.31■■□□□ 1
VIPAS39-209ENST00000556909 IFIT1BQ5T764 474 aaKnown RBP21.31■■□□□ 1
VIPAS39-209ENST00000556909 KRT40Q6A162 431 aa21.31■■□□□ 1
VIPAS39-209ENST00000556909 PPTC7Q8NI37 304 aa21.31■■□□□ 1
VIPAS39-209ENST00000556909 KATNAL1Q9BW62 490 aa21.31■■□□□ 1
VIPAS39-209ENST00000556909 AMNQ9BXJ7 453 aa21.31■■□□□ 1
VIPAS39-209ENST00000556909 IL25Q9H293 177 aa21.31■■□□□ 1
VIPAS39-209ENST00000556909 HDAC6Q9UBN7 1215 aa21.31■■□□□ 1
VIPAS39-209ENST00000556909 MICAL3Q7RTP6 2002 aa21.31■■□□□ 1
VIPAS39-209ENST00000556909 TLL1O43897 1013 aa21.3■■□□□ 1
VIPAS39-209ENST00000556909 PPP1R11O60927 126 aaPredicted RBP21.3■■□□□ 1
VIPAS39-209ENST00000556909 CKBP12277 381 aa21.3■■□□□ 1
VIPAS39-209ENST00000556909 BMP1P13497 986 aa21.3■■□□□ 1
VIPAS39-209ENST00000556909 SEC23AQ15436 765 aa21.3■■□□□ 1
VIPAS39-209ENST00000556909 SPRED2Q7Z698 418 aa21.3■■□□□ 1
VIPAS39-209ENST00000556909 C7orf31Q8N865 590 aa21.3■■□□□ 1
VIPAS39-209ENST00000556909 MTMR8Q96EF0 704 aa21.3■■□□□ 1
VIPAS39-209ENST00000556909 NECAB3Q96P71 396 aaPredicted RBP21.3■■□□□ 1
VIPAS39-209ENST00000556909 BRWD1Q9NSI6 2320 aa21.3■■□□□ 1
VIPAS39-209ENST00000556909 DOCK5Q9H7D0 1870 aa21.3■■□□□ 1
VIPAS39-209ENST00000556909 HAS3O00219 553 aa21.29■■□□□ 1
VIPAS39-209ENST00000556909 NBNO60934 754 aa21.29■■□□□ 1
VIPAS39-209ENST00000556909 PARNO95453 639 aaKnown RBP21.29■■□□□ 1
VIPAS39-209ENST00000556909 CXCL10P02778 98 aa21.29■■□□□ 1
VIPAS39-209ENST00000556909 COL9A1P20849 921 aa21.29■■□□□ 1
VIPAS39-209ENST00000556909 KCNQ1P51787 676 aa21.29■■□□□ 1
VIPAS39-209ENST00000556909 LAMC2Q13753 1193 aa21.29■■□□□ 1
VIPAS39-209ENST00000556909 MFSD10Q14728 455 aa21.29■■□□□ 1
VIPAS39-209ENST00000556909 AAK1Q2M2I8 961 aa21.29■■□□□ 1
VIPAS39-209ENST00000556909 CNKSR3Q6P9H4 555 aa21.29■■□□□ 1
VIPAS39-209ENST00000556909 TMCO2Q7Z6W1 182 aaPredicted RBP21.29■■□□□ 1
VIPAS39-209ENST00000556909 PDCD2LQ9BRP1 358 aa21.29■■□□□ 1
VIPAS39-209ENST00000556909 ALG1Q9BT22 464 aa21.29■■□□□ 1
VIPAS39-209ENST00000556909 LCHNA4D1U4 455 aa21.28■■□□□ 1
VIPAS39-209ENST00000556909 KLRF2D3W0D1 207 aa21.28■■□□□ 1
VIPAS39-209ENST00000556909 RGS20O76081 388 aa21.28■■□□□ 1
VIPAS39-209ENST00000556909 HOXD8P13378 290 aaPredicted RBP21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms