RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 DYNC1LI2O43237 492 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 ADCY6O43306 1168 aa13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 FOSP01100 380 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 TXNP10599 105 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 MCM2P49736 904 aa13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 ST3GAL1Q11201 340 aa13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 AP3B2Q13367 1082 aa13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 TMEM63BQ5T3F8 832 aa13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 NECAB2Q7Z6G3 386 aa13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 RNF180Q86T96 592 aa13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 TLK2Q86UE8 772 aa13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 REXO1Q8N1G1 1221 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 NSUN7Q8NE18 718 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 DIS3LQ8TF46 1054 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 PAWRQ96IZ0 340 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 ANO3Q9BYT9 981 aa13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 MRVI1Q9Y6F6 885 aa13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 SYNRGQ9UMZ2 1314 aa13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 RBM47A0AV96 593 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-212ENST00000556767 DNM1LO00429 736 aa13.1□□□□□ -0.31
CCDC88C-212ENST00000556767 CD2BP2O95400 341 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-212ENST00000556767 FDPSP14324 419 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-212ENST00000556767 PTGS1P23219 599 aa13.1□□□□□ -0.31
CCDC88C-212ENST00000556767 LRRC41Q15345 812 aa13.1□□□□□ -0.31
CCDC88C-212ENST00000556767 GNPTABQ3T906 1256 aa13.1□□□□□ -0.31
CCDC88C-212ENST00000556767 DUSP28Q4G0W2 176 aa13.1□□□□□ -0.31
CCDC88C-212ENST00000556767 PCNX4Q63HM2 1172 aa13.1□□□□□ -0.31
CCDC88C-212ENST00000556767 TEX2Q8IWB9 1127 aa13.1□□□□□ -0.31
CCDC88C-212ENST00000556767 RASGRP4Q8TDF6 673 aa13.1□□□□□ -0.31
CCDC88C-212ENST00000556767 C11orf49Q9H6J7 331 aa13.1□□□□□ -0.31
CCDC88C-212ENST00000556767 PCDHA4Q9UN74 947 aa13.1□□□□□ -0.31
CCDC88C-212ENST00000556767 KCNJ14Q9UNX9 436 aa13.1□□□□□ -0.31
CCDC88C-212ENST00000556767 FRMPD4Q14CM0 1322 aa13.1□□□□□ -0.31
CCDC88C-212ENST00000556767 MYADML2A6NDP7 307 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 ADAMTS3O15072 1205 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 STAM2O75886 525 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 ARIH2O95376 493 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 ZNF76P36508 570 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 IRX5P78411 483 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 MRPS9P82933 396 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 BEX3Q00994 111 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 MLLT1Q03111 559 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 TRIM29Q14134 588 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 LY6KQ17RY6 165 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 GNASQ5JWF2 1037 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 MCTP2Q6DN12 878 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 XRRA1Q6P2D8 792 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 NLRX1Q86UT6 975 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 BLIDQ8IZY5 108 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 FAM184AQ8NB25 1140 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 OR6J1Q8NGC5 347 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 COPS5Q92905 334 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 FERMT2Q96AC1 680 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 TMX3Q96JJ7 454 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 LLPHQ9BRT6 129 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 SENP6Q9GZR1 1112 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 GJB4Q9NTQ9 266 aa13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 GNEQ9Y223 722 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-212ENST00000556767 NKRFO15226 690 aaKnown RBP eCLIP13.08□□□□□ -0.32
CCDC88C-212ENST00000556767 SORBS3O60504 671 aa13.08□□□□□ -0.32
CCDC88C-212ENST00000556767 ADAMTS4O75173 837 aa13.08□□□□□ -0.32
CCDC88C-212ENST00000556767 CLK2P49760 499 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-212ENST00000556767 RGS19P49795 217 aa13.08□□□□□ -0.32
CCDC88C-212ENST00000556767 MNX1P50219 401 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-212ENST00000556767 GJA9P57773 515 aa13.08□□□□□ -0.32
CCDC88C-212ENST00000556767 GALNT17Q6IS24 598 aa13.08□□□□□ -0.32
CCDC88C-212ENST00000556767 KCNV1Q6PIU1 500 aa13.08□□□□□ -0.32
CCDC88C-212ENST00000556767 PCSK9Q8NBP7 692 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-212ENST00000556767 DDX41Q9UJV9 622 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-212ENST00000556767 Q9Y3F1 56 aa13.08□□□□□ -0.32
CCDC88C-212ENST00000556767 KIAA1217Q5T5P2 1943 aa13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 FIBPO43427 364 aa13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 ZEB2O60315 1214 aa13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 RGS20O76081 388 aa13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 GH1P01241 217 aa13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 SREBF1P36956 1147 aa13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 ATN1P54259 1190 aaPredicted RBP13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 HMGN5P82970 282 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 ARHGAP4P98171 946 aa13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 KCNA10Q16322 511 aa13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 FSCN1Q16658 493 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 BRDTQ58F21 947 aaPredicted RBP13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 CCDC62Q6P9F0 684 aa13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 DHX37Q8IY37 1157 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 FAM177A1Q8N128 213 aaPredicted RBP13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 VTI1AQ96AJ9 217 aa13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 HTATIP2Q9BUP3 242 aa13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 PHF20Q9BVI0 1012 aa13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 UPF3AQ9H1J1 476 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 BRMS1Q9HCU9 246 aa13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 PKD2L1Q9P0L9 805 aa13.07□□□□□ -0.32
CCDC88C-212ENST00000556767 CCDC194A0A1B0GVG4 234 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 GGPS1O95749 300 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 ASGR1P07306 291 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 MYL3P08590 195 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 CPT1AP50416 773 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 ACLYP53396 1101 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 GUCY1B3Q02153 619 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 MTMR1Q13613 665 aa13.06□□□□□ -0.32
CCDC88C-212ENST00000556767 UBE2Q1Q7Z7E8 422 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms