RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 EIF3JO75822 258 aaKnown RBP16.19■□□□□ 0.18
PTCH1-226ENST00000553011 RGS20O76081 388 aa16.19■□□□□ 0.18
PTCH1-226ENST00000553011 MRPS9P82933 396 aaKnown RBP16.19■□□□□ 0.18
PTCH1-226ENST00000553011 MLLT1Q03111 559 aaPredicted RBP16.19■□□□□ 0.18
PTCH1-226ENST00000553011 DUSP28Q4G0W2 176 aa16.19■□□□□ 0.18
PTCH1-226ENST00000553011 NECAB2Q7Z6G3 386 aa16.19■□□□□ 0.18
PTCH1-226ENST00000553011 TLK2Q86UE8 772 aa16.19■□□□□ 0.18
PTCH1-226ENST00000553011 NSUN7Q8NE18 718 aaKnown RBP16.19■□□□□ 0.18
PTCH1-226ENST00000553011 SCFD2Q8WU76 684 aa16.19■□□□□ 0.18
PTCH1-226ENST00000553011 CCDC12Q8WUD4 166 aaPredicted RBP16.19■□□□□ 0.18
PTCH1-226ENST00000553011 COPS5Q92905 334 aa16.19■□□□□ 0.18
PTCH1-226ENST00000553011 ZMYND12Q9H0C1 365 aa16.19■□□□□ 0.18
PTCH1-226ENST00000553011 UPF3AQ9H1J1 476 aaKnown RBP16.19■□□□□ 0.18
PTCH1-226ENST00000553011 KBTBD13C9JR72 458 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 DNM1LO00429 736 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 CTAGE5O15320 804 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 DYNC1LI2O43237 492 aaPredicted RBP16.18■□□□□ 0.18
PTCH1-226ENST00000553011 ST18O60284 1047 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 JAK2O60674 1132 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 CD2BP2O95400 341 aaKnown RBP16.18■□□□□ 0.18
PTCH1-226ENST00000553011 C6orf222P0C671 652 aaPredicted RBP16.18■□□□□ 0.18
PTCH1-226ENST00000553011 TXNP10599 105 aaKnown RBP16.18■□□□□ 0.18
PTCH1-226ENST00000553011 COL6A1P12109 1028 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 CLK2P49760 499 aaKnown RBP16.18■□□□□ 0.18
PTCH1-226ENST00000553011 GJA9P57773 515 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 JAKMIP3Q5VZ66 844 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 RNF180Q86T96 592 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 CCDC83Q8IWF9 413 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 KLHDC9Q8NEP7 349 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 CCDC148Q8NFR7 591 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 ZSCAN31Q96LW9 406 aaPredicted RBP16.18■□□□□ 0.18
PTCH1-226ENST00000553011 ANO3Q9BYT9 981 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 GLT8D2Q9H1C3 349 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 C11orf49Q9H6J7 331 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 C6orf50Q9HD87 102 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 SH3GLB2Q9NR46 395 aa16.18■□□□□ 0.18
PTCH1-226ENST00000553011 ORC3Q9UBD5 711 aaPredicted RBP16.18■□□□□ 0.18
PTCH1-226ENST00000553011 FDPSP14324 419 aaKnown RBP16.17■□□□□ 0.18
PTCH1-226ENST00000553011 BEX3Q00994 111 aa16.17■□□□□ 0.18
PTCH1-226ENST00000553011 TTLL4Q14679 1199 aa16.17■□□□□ 0.18
PTCH1-226ENST00000553011 PCNX4Q63HM2 1172 aa16.17■□□□□ 0.18
PTCH1-226ENST00000553011 CCDC62Q6P9F0 684 aa16.17■□□□□ 0.18
PTCH1-226ENST00000553011 TEX2Q8IWB9 1127 aa16.17■□□□□ 0.18
PTCH1-226ENST00000553011 RASGRP4Q8TDF6 673 aa16.17■□□□□ 0.18
PTCH1-226ENST00000553011 AP5M1Q9H0R1 490 aa16.17■□□□□ 0.18
PTCH1-226ENST00000553011 SPC25Q9HBM1 224 aa16.17■□□□□ 0.18
PTCH1-226ENST00000553011 RTEL1Q9NZ71 1219 aa16.17■□□□□ 0.18
PTCH1-226ENST00000553011 MRVI1Q9Y6F6 885 aa16.17■□□□□ 0.18
PTCH1-226ENST00000553011 FOSP01100 380 aaPredicted RBP16.16■□□□□ 0.18
PTCH1-226ENST00000553011 CST5P28325 142 aaPredicted RBP16.16■□□□□ 0.18
PTCH1-226ENST00000553011 GNA11P29992 359 aa16.16■□□□□ 0.18
PTCH1-226ENST00000553011 NLRP5P59047 1200 aa16.16■□□□□ 0.18
PTCH1-226ENST00000553011 AP3B2Q13367 1082 aa16.16■□□□□ 0.18
PTCH1-226ENST00000553011 KCNA10Q16322 511 aa16.16■□□□□ 0.18
PTCH1-226ENST00000553011 LY6KQ17RY6 165 aa16.16■□□□□ 0.18
PTCH1-226ENST00000553011 GNASQ5JWF2 1037 aa16.16■□□□□ 0.18
PTCH1-226ENST00000553011 REXO1Q8N1G1 1221 aaKnown RBP16.16■□□□□ 0.18
PTCH1-226ENST00000553011 FERMT2Q96AC1 680 aa16.16■□□□□ 0.18
PTCH1-226ENST00000553011 SENP6Q9GZR1 1112 aaPredicted RBP16.16■□□□□ 0.18
PTCH1-226ENST00000553011 SH2B1Q9NRF2 756 aaPredicted RBP16.16■□□□□ 0.18
PTCH1-226ENST00000553011 GJB4Q9NTQ9 266 aa16.16■□□□□ 0.18
PTCH1-226ENST00000553011 DDX41Q9UJV9 622 aaKnown RBP16.16■□□□□ 0.18
PTCH1-226ENST00000553011 PHF24Q9UPV7 400 aa16.16■□□□□ 0.18
PTCH1-226ENST00000553011 Q9Y3F1 56 aa16.16■□□□□ 0.18
PTCH1-226ENST00000553011 NKRFO15226 690 aaKnown RBP eCLIP16.15■□□□□ 0.18
PTCH1-226ENST00000553011 NKX3-2P78367 333 aa16.15■□□□□ 0.18
PTCH1-226ENST00000553011 NPY5RQ15761 445 aa16.15■□□□□ 0.18
PTCH1-226ENST00000553011 FSCN1Q16658 493 aaKnown RBP16.15■□□□□ 0.18
PTCH1-226ENST00000553011 CCSAPQ6IQ19 270 aaPredicted RBP16.15■□□□□ 0.18
PTCH1-226ENST00000553011 XRRA1Q6P2D8 792 aa16.15■□□□□ 0.18
PTCH1-226ENST00000553011 OR6J1Q8NGC5 347 aa16.15■□□□□ 0.18
PTCH1-226ENST00000553011 INPP4AQ96PE3 977 aaPredicted RBP16.15■□□□□ 0.18
PTCH1-226ENST00000553011 ALG1Q9BT22 464 aa16.15■□□□□ 0.18
PTCH1-226ENST00000553011 EHMT1Q9H9B1 1298 aa16.15■□□□□ 0.18
PTCH1-226ENST00000553011 KCNJ14Q9UNX9 436 aa16.15■□□□□ 0.18
PTCH1-226ENST00000553011 SORBS3O60504 671 aa16.14■□□□□ 0.17
PTCH1-226ENST00000553011 STAM2O75886 525 aa16.14■□□□□ 0.17
PTCH1-226ENST00000553011 ASGR1P07306 291 aa16.14■□□□□ 0.17
PTCH1-226ENST00000553011 ACLYP53396 1101 aa16.14■□□□□ 0.17
PTCH1-226ENST00000553011 FOSBP53539 338 aa16.14■□□□□ 0.17
PTCH1-226ENST00000553011 SP2Q02086 613 aa16.14■□□□□ 0.17
PTCH1-226ENST00000553011 ARHGAP1Q07960 439 aa16.14■□□□□ 0.17
PTCH1-226ENST00000553011 SEMA3FQ13275 785 aa16.14■□□□□ 0.17
PTCH1-226ENST00000553011 BICD2Q8TD16 824 aa16.14■□□□□ 0.17
PTCH1-226ENST00000553011 TSEN34Q9BSV6 310 aaKnown RBP16.14■□□□□ 0.17
PTCH1-226ENST00000553011 PCDHA4Q9UN74 947 aa16.14■□□□□ 0.17
PTCH1-226ENST00000553011 DNAH12Q6ZR08 3092 aa16.14■□□□□ 0.17
PTCH1-226ENST00000553011 SCN10AQ9Y5Y9 1956 aa16.13■□□□□ 0.17
PTCH1-226ENST00000553011 A0A1W2PQ45 241 aaPredicted RBP16.13■□□□□ 0.17
PTCH1-226ENST00000553011 A0A1W2PQY0 241 aa16.13■□□□□ 0.17
PTCH1-226ENST00000553011 GH1P01241 217 aa16.13■□□□□ 0.17
PTCH1-226ENST00000553011 ITGB5P18084 799 aa16.13■□□□□ 0.17
PTCH1-226ENST00000553011 UBA1P22314 1058 aaKnown RBP16.13■□□□□ 0.17
PTCH1-226ENST00000553011 SREBF1P36956 1147 aa16.13■□□□□ 0.17
PTCH1-226ENST00000553011 ATN1P54259 1190 aaPredicted RBP16.13■□□□□ 0.17
PTCH1-226ENST00000553011 GNPTABQ3T906 1256 aa16.13■□□□□ 0.17
PTCH1-226ENST00000553011 KCNV1Q6PIU1 500 aa16.13■□□□□ 0.17
PTCH1-226ENST00000553011 BLIDQ8IZY5 108 aa16.13■□□□□ 0.17
PTCH1-226ENST00000553011 PCSK9Q8NBP7 692 aaKnown RBP16.13■□□□□ 0.17
PTCH1-226ENST00000553011 IL27Q8NEV9 243 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms