RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 TCEA2Q15560 299 aa5.01□□□□□ -1.61
LIMA1-208ENST00000551691 LRRFIP1Q32MZ4 808 aaKnown RBP5.01□□□□□ -1.61
LIMA1-208ENST00000551691 CT47A1Q5JQC4 288 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-208ENST00000551691 RASIP1Q5U651 963 aa5.01□□□□□ -1.61
LIMA1-208ENST00000551691 C16orf86Q6ZW13 317 aa5.01□□□□□ -1.61
LIMA1-208ENST00000551691 FAM214BQ7L5A3 538 aa5.01□□□□□ -1.61
LIMA1-208ENST00000551691 ARHGEF25Q86VW2 580 aa5.01□□□□□ -1.61
LIMA1-208ENST00000551691 SPACA3Q8IXA5 215 aa5.01□□□□□ -1.61
LIMA1-208ENST00000551691 THAP3Q8WTV1 239 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-208ENST00000551691 KRTAP4-9Q9BYQ8 210 aa5.01□□□□□ -1.61
LIMA1-208ENST00000551691 KLHL42Q9P2K6 505 aa5.01□□□□□ -1.61
LIMA1-208ENST00000551691 ZNRF3Q9ULT6 936 aa5.01□□□□□ -1.61
LIMA1-208ENST00000551691 PCDHB14Q9Y5E9 798 aa5.01□□□□□ -1.61
LIMA1-208ENST00000551691 COL18A1P39060 1754 aa5.01□□□□□ -1.61
LIMA1-208ENST00000551691 PXDNLA1KZ92 1463 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 KNDC1Q76NI1 1749 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 ZNF503-AS2A6NEH8 195 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 IL2RBP14784 551 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 GYS2P54840 703 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 TGFB2P61812 414 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 ERVK-24P63145 666 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 RPL6Q02878 288 aaKnown RBP5□□□□□ -1.61
LIMA1-208ENST00000551691 ZNF252P-AS1Q0IIN9 211 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 MESP2Q0VG99 397 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 GRM1Q13255 1194 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 KCNMB1Q16558 191 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 NKPD1Q17RQ9 610 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 C2orf27AQ580R0 203 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 HABP4Q5JVS0 413 aaKnown RBP5□□□□□ -1.61
LIMA1-208ENST00000551691 CCDC181Q5TID7 509 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 SLC23A3Q6PIS1 610 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 EEPD1Q7L9B9 569 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 LSRQ86X29 649 aaPredicted RBP5□□□□□ -1.61
LIMA1-208ENST00000551691 ZSWIM9Q86XI8 627 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 FAM169BQ8N8A8 192 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 TMEM40Q8WWA1 233 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 IPO9Q96P70 1041 aaKnown RBP5□□□□□ -1.61
LIMA1-208ENST00000551691 TNKS2Q9H2K2 1166 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 SLC12A7Q9Y666 1083 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 NSD2O96028 1365 aa5□□□□□ -1.61
LIMA1-208ENST00000551691 CICQ96RK0 1608 aaPredicted RBP5□□□□□ -1.61
LIMA1-208ENST00000551691 CNTNAP4Q9C0A0 1308 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 WDR33Q9C0J8 1336 aaKnown RBP4.99□□□□□ -1.61
LIMA1-208ENST00000551691 PIK3C2GO75747 1445 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 PPIP5K1Q6PFW1 1433 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 C10orf71Q711Q0 1435 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 PRR33A8MZF0 331 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 AGRPO00253 132 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 CILPO75339 1184 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 GJB6O95452 261 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 CHRNA5P30532 468 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 CLCQ05315 142 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 DEFB115Q30KQ5 88 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 C6orf15Q6UXA7 325 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-208ENST00000551691 SYNPOQ8N3V7 929 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 SLC38A3Q99624 504 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 TM9SF2Q99805 663 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 KCNK12Q9HB15 430 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 MKNK2Q9HBH9 465 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 PCDHA4Q9UN74 947 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 MSRB2Q9Y3D2 182 aa4.99□□□□□ -1.61
LIMA1-208ENST00000551691 CASP8AP2Q9UKL3 1982 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 WNK3Q9BYP7 1800 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 FAM221AA4D161 298 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-208ENST00000551691 ASMTLO95671 621 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 EOMESO95936 686 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 FBLN7Q53RD9 439 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 DALRD3Q5D0E6 543 aaKnown RBP4.98□□□□□ -1.61
LIMA1-208ENST00000551691 CDKAL1Q5VV42 579 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 PRR23BQ6ZRT6 265 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 FAM178BQ8IXR5 827 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 LILRB2Q8N423 598 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 ZSWIM2Q8NEG5 633 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 FLAD1Q8NFF5 587 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 ST13P5Q8NFI4 369 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-208ENST00000551691 ELMO3Q96BJ8 720 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 PSMD1Q99460 953 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 CARS2Q9HA77 564 aaKnown RBP4.98□□□□□ -1.61
LIMA1-208ENST00000551691 TMEM260Q9NX78 707 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 GTF2IRD1Q9UHL9 959 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 CTNND2Q9UQB3 1225 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 COL6A3P12111 3177 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 POLR3AO14802 1390 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-208ENST00000551691 PLEKHG2Q9H7P9 1386 aa4.98□□□□□ -1.61
LIMA1-208ENST00000551691 MKI67P46013 3256 aaKnown RBP4.98□□□□□ -1.61
LIMA1-208ENST00000551691 PASKQ96RG2 1323 aa4.97□□□□□ -1.61
LIMA1-208ENST00000551691 SBF1O95248 1867 aa4.97□□□□□ -1.61
LIMA1-208ENST00000551691 ROCK1Q13464 1354 aa4.97□□□□□ -1.61
LIMA1-208ENST00000551691 PRAMEF27A3QJZ7 478 aa4.97□□□□□ -1.61
LIMA1-208ENST00000551691 IQCA1LA6NCM1 817 aa4.97□□□□□ -1.61
LIMA1-208ENST00000551691 GNAT3A8MTJ3 354 aa4.97□□□□□ -1.61
LIMA1-208ENST00000551691 BMP6P22004 513 aa4.97□□□□□ -1.61
LIMA1-208ENST00000551691 GUCY2CP25092 1073 aa4.97□□□□□ -1.61
LIMA1-208ENST00000551691 CASP7P55210 303 aa4.97□□□□□ -1.61
LIMA1-208ENST00000551691 MAP2K1Q02750 393 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-208ENST00000551691 PDE4BQ07343 736 aa4.97□□□□□ -1.61
LIMA1-208ENST00000551691 NCAPHQ15003 741 aa4.97□□□□□ -1.61
LIMA1-208ENST00000551691 SCARA3Q6AZY7 606 aa4.97□□□□□ -1.61
LIMA1-208ENST00000551691 VHLLQ6RSH7 139 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms