RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 PODNQ7Z5L7 613 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 PAIP2Q9BPZ3 127 aaKnown RBP16.51■□□□□ 0.23
CUX1-214ENST00000550008 TEKT3Q9BXF9 490 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 STK17AQ9UEE5 414 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 PCDHA6Q9UN73 950 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 PCDHA8Q9Y5H6 950 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 NDUFA10O95299 355 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 ZBTB7AO95365 584 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 GBP2P32456 591 aaPredicted RBP16.51■□□□□ 0.23
CUX1-214ENST00000550008 EIF4A3P38919 411 aaKnown RBP16.51■□□□□ 0.23
CUX1-214ENST00000550008 MAN2A1Q16706 1144 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 WDR44Q5JSH3 913 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 RC3H1Q5TC82 1133 aaKnown RBP16.51■□□□□ 0.23
CUX1-214ENST00000550008 TTLL6Q8N841 843 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 FAM133AQ8N9E0 248 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 GLG1Q92896 1179 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 CCDC114Q96M63 670 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 USTQ9Y2C2 406 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 RCAN1P53805 252 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 FBXO38Q6PIJ6 1188 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 GBP6Q6ZN66 633 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 ARHGAP27Q6ZUM4 889 aa16.51■□□□□ 0.23
CUX1-214ENST00000550008 OSBPL5Q9H0X9 879 aaPredicted RBP16.51■□□□□ 0.23
CUX1-214ENST00000550008 ZBTB12Q9Y330 459 aaPredicted RBP16.51■□□□□ 0.23
CUX1-214ENST00000550008 KDM4FA0A1W2PPD8 638 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 POTEFA5A3E0 1075 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 POTEIP0CG38 1075 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 GCFC2P16383 781 aaKnown RBP16.5■□□□□ 0.23
CUX1-214ENST00000550008 EN1Q05925 392 aaPredicted RBP16.5■□□□□ 0.23
CUX1-214ENST00000550008 PPP1R7Q15435 360 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 POTEGQ6S5H5 508 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 POTEEQ6S8J3 1075 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 BARGINQ6ZT62 677 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 FOXP4Q8IVH2 680 aaPredicted RBP16.5■□□□□ 0.23
CUX1-214ENST00000550008 TRIM58Q8NG06 486 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 MPHOSPH6Q99547 160 aaKnown RBP16.5■□□□□ 0.23
CUX1-214ENST00000550008 ZNF341Q9BYN7 854 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 SUGCTQ9HAC7 445 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 JCADQ9P266 1359 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 OPA1O60313 960 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 NCBP1Q09161 790 aaKnown RBP16.5■□□□□ 0.23
CUX1-214ENST00000550008 TMEM179Q6ZVK1 233 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 MB21D1Q8N884 522 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 STRN3Q13033 797 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 CFAP221Q4G0U5 840 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 EEPD1Q7L9B9 569 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 SELENOSQ9BQE4 189 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 SH2D3AQ9BRG2 576 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 SH3GLB2Q9NR46 395 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 DDX41Q9UJV9 622 aaKnown RBP16.5■□□□□ 0.23
CUX1-214ENST00000550008 CNTNAP5Q8WYK1 1306 aa16.5■□□□□ 0.23
CUX1-214ENST00000550008 PRPHP41219 470 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 NBPF11Q86T75 865 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 ANKRD35Q8N283 1001 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 MAGEF1Q9HAY2 307 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 UBR1Q8IWV7 1749 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 GNA14O95837 355 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 MYZAPP0CAP1 466 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 TOB1P50616 345 aaPredicted RBP16.49■□□□□ 0.23
CUX1-214ENST00000550008 IRX3P78415 501 aaPredicted RBP16.49■□□□□ 0.23
CUX1-214ENST00000550008 PTPAQ15257 358 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 CCDC93Q567U6 631 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 PLCD3Q8N3E9 789 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 MTMR4Q9NYA4 1195 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 ADAMTS1Q9UHI8 967 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 TCRBV5S4A2TA0A5A2 114 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 NTRK3Q16288 839 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 MRRFQ96E11 262 aaKnown RBP16.49■□□□□ 0.23
CUX1-214ENST00000550008 TTC26A0AVF1 554 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 FTCDO95954 541 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 FUCA2Q9BTY2 467 aa16.49■□□□□ 0.23
CUX1-214ENST00000550008 NHEJ1Q9H9Q4 299 aaPredicted RBP16.49■□□□□ 0.23
CUX1-214ENST00000550008 BCL9O00512 1426 aa16.48■□□□□ 0.23
CUX1-214ENST00000550008 ARHGAP4P98171 946 aa16.48■□□□□ 0.23
CUX1-214ENST00000550008 WHAMMP3Q1A5X7 153 aa16.48■□□□□ 0.23
CUX1-214ENST00000550008 E4F1Q66K89 784 aaPredicted RBP16.48■□□□□ 0.23
CUX1-214ENST00000550008 ZNF772Q68DY9 489 aaPredicted RBP16.48■□□□□ 0.23
CUX1-214ENST00000550008 SRGAP1Q7Z6B7 1085 aa16.48■□□□□ 0.23
CUX1-214ENST00000550008 SP8Q8IXZ3 490 aa16.48■□□□□ 0.23
CUX1-214ENST00000550008 HOOK2Q96ED9 719 aa16.48■□□□□ 0.23
CUX1-214ENST00000550008 SRGAP2O75044 1071 aa16.48■□□□□ 0.23
CUX1-214ENST00000550008 MOCS3O95396 460 aa16.48■□□□□ 0.23
CUX1-214ENST00000550008 TUBBP07437 444 aa16.48■□□□□ 0.23
CUX1-214ENST00000550008 TUBB4BP68371 445 aa16.48■□□□□ 0.23
CUX1-214ENST00000550008 FAM76AQ8TAV0 307 aa16.48■□□□□ 0.23
CUX1-214ENST00000550008 RASAL2Q9UJF2 1139 aa16.48■□□□□ 0.23
CUX1-214ENST00000550008 NEBLO76041 1014 aa16.48■□□□□ 0.23
CUX1-214ENST00000550008 CD19P15391 556 aa16.48■□□□□ 0.23
CUX1-214ENST00000550008 CCZ1BP86790 482 aa16.48■□□□□ 0.23
CUX1-214ENST00000550008 CCZ1P86791 482 aaPredicted RBP16.48■□□□□ 0.23
CUX1-214ENST00000550008 EAPPQ56P03 285 aaPredicted RBP16.48■□□□□ 0.23
CUX1-214ENST00000550008 ILDR1Q86SU0 546 aaPredicted RBP16.48■□□□□ 0.23
CUX1-214ENST00000550008 GOLGA6BA6NDN3 693 aa16.47■□□□□ 0.23
CUX1-214ENST00000550008 ZBED6P86452 979 aa16.47■□□□□ 0.23
CUX1-214ENST00000550008 EVX2Q03828 476 aa16.47■□□□□ 0.23
CUX1-214ENST00000550008 AGXT2Q9BYV1 514 aa16.47■□□□□ 0.23
CUX1-214ENST00000550008 KRT19P08727 400 aa16.47■□□□□ 0.23
CUX1-214ENST00000550008 H2AFZP0C0S5 128 aa16.47■□□□□ 0.23
CUX1-214ENST00000550008 BCRP11274 1271 aa16.47■□□□□ 0.23
CUX1-214ENST00000550008 SBK1Q52WX2 424 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms