RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 PPP4R1Q8TF05 950 aa13.66□□□□□ -0.22
COL4A6-209ENST00000545689 GDAP1L1Q96MZ0 367 aa13.66□□□□□ -0.22
COL4A6-209ENST00000545689 DPH5Q9H2P9 285 aa13.66□□□□□ -0.22
COL4A6-209ENST00000545689 PCDHB6Q9Y5E3 794 aa13.66□□□□□ -0.22
COL4A6-209ENST00000545689 PRKAB2O43741 272 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 NR5A1Q13285 461 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 ALS2CLQ60I27 953 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 UIMC1Q96RL1 719 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 PIGSQ96S52 555 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 ADPGKQ9BRR6 497 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 NHEJ1Q9H9Q4 299 aaPredicted RBP13.65□□□□□ -0.22
COL4A6-209ENST00000545689 DISC1Q9NRI5 854 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 NOD1Q9Y239 953 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 NDUFA10O95299 355 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 PTPREP23469 700 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 PIK3CAP42336 1068 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 ZNF577Q9BSK1 485 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 FTOQ9C0B1 505 aaKnown RBP eCLIP13.65□□□□□ -0.22
COL4A6-209ENST00000545689 SERPINB13Q9UIV8 391 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 DIS3Q9Y2L1 958 aaKnown RBP13.65□□□□□ -0.22
COL4A6-209ENST00000545689 USP42Q9H9J4 1324 aaKnown RBP13.65□□□□□ -0.22
COL4A6-209ENST00000545689 MFAP3LO75121 409 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 PPM1FP49593 454 aaPredicted RBP13.65□□□□□ -0.22
COL4A6-209ENST00000545689 CASC4Q6P4E1 433 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 TMTC3Q6ZXV5 915 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 PNMA6FA0A0J9YX94 578 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 APBA3O96018 575 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 POLGP54098 1239 aaPredicted RBP13.65□□□□□ -0.22
COL4A6-209ENST00000545689 BFSP1Q12934 665 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 RINT1Q6NUQ1 792 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 PPP1R18Q6NYC8 613 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 WHAMMQ8TF30 809 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 MB21D1Q8N884 522 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 GJA10Q969M2 543 aa13.65□□□□□ -0.22
COL4A6-209ENST00000545689 CNOT10Q9H9A5 744 aaKnown RBP13.65□□□□□ -0.22
COL4A6-209ENST00000545689 DLC1Q96QB1 1528 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 CCDC38Q502W7 563 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 CDHR1Q96JP9 859 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 SAMSN1Q9NSI8 373 aaKnown RBP13.64□□□□□ -0.23
COL4A6-209ENST00000545689 TMEM191BP0C7N4 346 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 SH3BGRP55822 239 aaPredicted RBP13.64□□□□□ -0.23
COL4A6-209ENST00000545689 KMT5BQ4FZB7 885 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 KIAA0825Q8IV33 1275 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 CAPN7Q9Y6W3 813 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 E9PCH4 1651 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 SLC12A2P55011 1212 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 DMTNQ08495 405 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 AP3B2Q13367 1082 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 GRAPQ13588 217 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 MAP7D3Q8IWC1 876 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 GRAPLQ8TC17 118 aaPredicted RBP13.64□□□□□ -0.23
COL4A6-209ENST00000545689 TCP10L2B9ZVM9 353 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 IGKV5-2P06315 115 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 MCAMP43121 646 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 YARSP54577 528 aaKnown RBP13.64□□□□□ -0.23
COL4A6-209ENST00000545689 POMGNT1Q8WZA1 660 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 EXOC4Q96A65 974 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 RIOK1Q9BRS2 568 aaKnown RBP13.64□□□□□ -0.23
COL4A6-209ENST00000545689 HESX1Q9UBX0 185 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 PLCG1P19174 1290 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 MECOMQ03112 1051 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 RNASELQ05823 741 aaKnown RBP13.64□□□□□ -0.23
COL4A6-209ENST00000545689 DOK7Q18PE1 504 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 PHLDB3Q6NSJ2 640 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 TRIM50Q86XT4 487 aa13.64□□□□□ -0.23
COL4A6-209ENST00000545689 SYDE2Q5VT97 1194 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 DAAM1Q9Y4D1 1078 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 PCDHA13Q9Y5I0 950 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 SOWAHDA6NJG2 315 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 MYO1FO00160 1098 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 RNF8O76064 485 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 HEXIM1O94992 359 aaKnown RBP13.63□□□□□ -0.23
COL4A6-209ENST00000545689 BMP3P12645 472 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 SLFNL1Q499Z3 407 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 GLE1Q53GS7 698 aaKnown RBP13.63□□□□□ -0.23
COL4A6-209ENST00000545689 FAM160B2Q86V87 743 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 EMILIN3Q9NT22 766 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 ARHGEF40Q8TER5 1519 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 CC2D2BQ6DHV5 1058 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 RASGRP4Q8TDF6 673 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 RABEP2Q9H5N1 569 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 EVI5O60447 810 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 MB21D2Q8IYB1 491 aaPredicted RBP13.63□□□□□ -0.23
COL4A6-209ENST00000545689 SMYD4Q8IYR2 804 aaPredicted RBP13.63□□□□□ -0.23
COL4A6-209ENST00000545689 GRAMD1CQ8IYS0 662 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 PROM2Q8N271 834 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 MGARPQ8TDB4 240 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 OSBPL5Q9H0X9 879 aaPredicted RBP13.63□□□□□ -0.23
COL4A6-209ENST00000545689 PALLDQ8WX93 1383 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 IL9RQ01113 521 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 CTAGE3PQ8IX95 158 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 PIGBQ92521 554 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 NDST4Q9H3R1 872 aa13.63□□□□□ -0.23
COL4A6-209ENST00000545689 ZNF277Q9NRM2 450 aaPredicted RBP13.63□□□□□ -0.23
COL4A6-209ENST00000545689 CNGA1P29973 690 aa13.62□□□□□ -0.23
COL4A6-209ENST00000545689 GARSP41250 739 aaKnown RBP13.62□□□□□ -0.23
COL4A6-209ENST00000545689 CYP4A11Q02928 519 aa13.62□□□□□ -0.23
COL4A6-209ENST00000545689 SLMAPQ14BN4 828 aa13.62□□□□□ -0.23
COL4A6-209ENST00000545689 KRT31Q15323 416 aa13.62□□□□□ -0.23
COL4A6-209ENST00000545689 PI16Q6UXB8 463 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms