RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	TRIM47	Q96LD4	638 aa		13.5	□□□□□ -0.25
DDB1-223	ENST00000543658	DDX25	Q9UHL0	483 aa	Known RBP	13.5	□□□□□ -0.25
DDB1-223	ENST00000543658	TCEAL9	Q9UHQ7	104 aa		13.5	□□□□□ -0.25
DDB1-223	ENST00000543658	SOWAHB	A6NEL2	793 aa		13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	GOLGA6L22	H0YM25	854 aa		13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	FIBP	O43427	364 aa		13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	COBL	O75128	1261 aa		13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	BAG4	O95429	457 aa	Known RBP	13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	TDP2	O95551	362 aa		13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	PRMT2	P55345	433 aa		13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	SF3A1	Q15459	793 aa	Known RBP	13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	PRR16	Q569H4	304 aa		13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	ANO1	Q5XXA6	986 aa		13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	PPP4R3A	Q6IN85	833 aa		13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	ARMCX2	Q7L311	632 aa		13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	PLA2G4D	Q86XP0	818 aa		13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	TRMT44	Q8IYL2	757 aa	Known RBP	13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	MSL3	Q8N5Y2	521 aa	Known RBP	13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	RAET1E	Q8TD07	263 aa		13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	MAML3	Q96JK9	1138 aa		13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	USP28	Q96RU2	1077 aa		13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	RNF216	Q9NWF9	866 aa	Predicted RBP	13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	PCDHB6	Q9Y5E3	794 aa		13.49	□□□□□ -0.25
DDB1-223	ENST00000543658	SYNGAP1	Q96PV0	1343 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	LAD1	O00515	517 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	EIF3J	O75822	258 aa	Known RBP	13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	YEATS4	O95619	227 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	CTGF	P29279	349 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	CIITA	P33076	1130 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	FLT3LG	P49771	235 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	PRKCZ	Q05513	592 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	MTMR1	Q13613	665 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	NBR1	Q14596	966 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	CALCRL	Q16602	461 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	TMEM266	Q2M3C6	531 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	CEP55	Q53EZ4	464 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	JMY	Q8N9B5	988 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	IL31RA	Q8NI17	732 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	NPLOC4	Q8TAT6	608 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	CDHR1	Q96JP9	859 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	SPATA32	Q96LK8	384 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	MXRA8	Q9BRK3	442 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	SCAND2P	Q9GZW5	306 aa	Predicted RBP	13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	POLR3E	Q9NVU0	708 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	RTEL1	Q9NZ71	1219 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	TFIP11	Q9UBB9	837 aa	Known RBP	13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	SRRD	Q9UH36	339 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	CNPY2	Q9Y2B0	182 aa		13.48	□□□□□ -0.25
DDB1-223	ENST00000543658	HOXC6	P09630	235 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	OR52Z1	P0C646	297 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	HSPA1A	P0DMV8	641 aa	Known RBP	13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	HSPA1B	P0DMV9	641 aa	Known RBP	13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	XRCC5	P13010	732 aa	Known RBP	13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	TOB1	P50616	345 aa	Predicted RBP	13.47	□□□□□ -0.25
DDB1-223	ENST00000543658		Q4G0T1	1027 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	MFSD14C	Q5VZR4	134 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	OLFML2B	Q68BL8	750 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	NIPA1	Q7RTP0	329 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	VSIG10L	Q86VR7	867 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	POTED	Q86YR6	584 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	SLFN12	Q8IYM2	578 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	KCNG4	Q8TDN1	519 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	GPRASP2	Q96D09	838 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	TINF2	Q9BSI4	451 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	VTA1	Q9NP79	307 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	GABRQ	Q9UN88	632 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	TRIM17	Q9Y577	477 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	CLIC4	Q9Y696	253 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	WDR81	Q562E7	1941 aa		13.47	□□□□□ -0.25
DDB1-223	ENST00000543658	ASTN1	O14525	1302 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	CYP3A7-CYP3A51P	A0A087WV96	503 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	FAM86B1	E9PN63	330 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	SPTLC2	O15270	562 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	SLC37A4	O43826	429 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	FAM86B2	P0C5J1	330 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	CYP3A7	P24462	503 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	EDNRB	P24530	442 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	NASP	P49321	788 aa	Predicted RBP	13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	CTCF	P49711	727 aa	Predicted RBP	13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	MRPS9	P82933	396 aa	Known RBP	13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	PTGDR	Q13258	359 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	KCNV1	Q6PIU1	500 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	MAMDC4	Q6UXC1	1216 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	SEPT14	Q6ZU15	432 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	EEPD1	Q7L9B9	569 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	FBXO16	Q8IX29	292 aa	Predicted RBP	13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	CRYGN	Q8WXF5	182 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	USP6NL	Q92738	828 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	ZFP91	Q96JP5	570 aa	Predicted RBP	13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	FGD4	Q96M96	766 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	ZNF577	Q9BSK1	485 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	RAB34	Q9BZG1	259 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	FTO	Q9C0B1	505 aa	Known RBP eCLIP	13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	JADE2	Q9NQC1	790 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	GJD2	Q9UKL4	321 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	UBIAD1	Q9Y5Z9	338 aa		13.46	□□□□□ -0.25
DDB1-223	ENST00000543658	MRVI1	Q9Y6F6	885 aa		13.46	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms