RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SYNGAP1	Q96PV0	1343 aa		11.56	□□□□□ -0.56
CPSF7-221	ENST00000543545	CCNT1	O60563	726 aa	Known RBP	11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	MYC	P01106	439 aa	Predicted RBP	11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	HMGCR	P04035	888 aa		11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	EDNRB	P24530	442 aa		11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	CNGA1	P29973	690 aa		11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	ACVR2B	Q13705	512 aa		11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	GNPTAB	Q3T906	1256 aa		11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	SLC9C1	Q4G0N8	1177 aa		11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	CEP55	Q53EZ4	464 aa		11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	PRR16	Q569H4	304 aa		11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	FBXO46	Q6PJ61	603 aa	Predicted RBP	11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	BRAP	Q7Z569	592 aa		11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	PLA2G4D	Q86XP0	818 aa		11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	SH3TC2	Q8TF17	1288 aa		11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	NAP1L4	Q99733	375 aa	Known RBP	11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	MXRA8	Q9BRK3	442 aa		11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	ABHD16B	Q9H3Z7	469 aa		11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545		A0A0G2JMZ2	1700 aa		11.55	□□□□□ -0.56
CPSF7-221	ENST00000543545	STAM2	O75886	525 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	F13A1	P00488	732 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	INHA	P05111	366 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	CYP3A4	P08684	503 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	PRKAR2A	P13861	404 aa	Known RBP	11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	MCM7	P33993	719 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	TRAPPC10	P48553	1259 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	MRPS9	P82933	396 aa	Known RBP	11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	TRIM32	Q13049	653 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	REST	Q13127	1097 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	ZNF174	Q15697	407 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	RILPL1	Q5EBL4	403 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	TTC38	Q5R3I4	469 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	MORC4	Q8TE76	937 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	UIMC1	Q96RL1	719 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	VTA1	Q9NP79	307 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	JADE2	Q9NQC1	790 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	PDGFC	Q9NRA1	345 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	CHMP5	Q9NZZ3	219 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	PKD2L1	Q9P0L9	805 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	DDX25	Q9UHL0	483 aa	Known RBP	11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	MRVI1	Q9Y6F6	885 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	FRMPD4	Q14CM0	1322 aa		11.54	□□□□□ -0.56
CPSF7-221	ENST00000543545	TDP2	O95551	362 aa		11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	BRD1	O95696	1058 aa		11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	GCFC2	P16383	781 aa	Known RBP	11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	ITGB5	P18084	799 aa		11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	CIITA	P33076	1130 aa		11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	CACNB2	Q08289	660 aa	Predicted RBP	11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	MTMR1	Q13613	665 aa		11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	TTLL4	Q14679	1199 aa		11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	MYSM1	Q5VVJ2	828 aa		11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	FAM173B	Q6P4H8	233 aa		11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	CYP2W1	Q8TAV3	490 aa		11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	SCFD2	Q8WU76	684 aa		11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	CDHR1	Q96JP9	859 aa		11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	ZNF396	Q96N95	335 aa	Predicted RBP	11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	WDR11	Q9BZH6	1224 aa		11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	NRBP1	Q9UHY1	535 aa		11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	FAM184B	Q9ULE4	1060 aa		11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	UBIAD1	Q9Y5Z9	338 aa		11.53	□□□□□ -0.56
CPSF7-221	ENST00000543545	PARP14	Q460N5	1801 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	FAM86B1	E9PN63	330 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	MEIS1	O00470	390 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	FIBP	O43427	364 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	FAM86B2	P0C5J1	330 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	ZNF865	P0CJ78	1059 aa	Predicted RBP	11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	AR	P10275	920 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	TXN	P10599	105 aa	Known RBP	11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	NCL	P19338	710 aa	Known RBP	11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	ADCYAP1R1	P41586	468 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	SET	Q01105	290 aa	Predicted RBP	11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	CEBPZ	Q03701	1054 aa	Known RBP	11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	NBR1	Q14596	966 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	CCDC144B	Q3MJ40	725 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	IQSEC1	Q6DN90	963 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	KCNV1	Q6PIU1	500 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	CRYGN	Q8WXF5	182 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	GPRASP2	Q96D09	838 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	INPP4A	Q96PE3	977 aa	Predicted RBP	11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	ZNF577	Q9BSK1	485 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	HMX1	Q9NP08	348 aa	Predicted RBP	11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	ZDHHC9	Q9Y397	364 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	ATP6V1D	Q9Y5K8	247 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	PCNT	O95613	3336 aa		11.52	□□□□□ -0.57
CPSF7-221	ENST00000543545	COL11A1	P12107	1806 aa	Predicted RBP	11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	CYP3A7-CYP3A51P	A0A087WV96	503 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	SPATA31C2	B4DYI2	1134 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	MAFG	O15525	162 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	EDIL3	O43854	480 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	SORBS3	O60504	671 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	NEMF	O60524	1076 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	RGS20	O76081	388 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	BAG4	O95429	457 aa	Known RBP	11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	CYBA	P13498	195 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	CYP3A7	P24462	503 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	CCND3	P30281	292 aa	Predicted RBP	11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	DDIT3	P35638	169 aa		11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	TOB1	P50616	345 aa	Predicted RBP	11.51	□□□□□ -0.57
CPSF7-221	ENST00000543545	TNFAIP2	Q03169	654 aa		11.51	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms