RNA–Protein interactions for RNA: ENST00000542817.1

NPIPB3-210, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 5 BASIC

Gene NPIPB3, Length 1,342 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-210ENST00000542817 MSL3Q8N5Y2 521 aaKnown RBP12.19□□□□□ -0.46
NPIPB3-210ENST00000542817 IWS1Q96ST2 819 aa12.19□□□□□ -0.46
NPIPB3-210ENST00000542817 PRDM10Q9NQV6 1147 aa12.19□□□□□ -0.46
NPIPB3-210ENST00000542817 UBIAD1Q9Y5Z9 338 aa12.19□□□□□ -0.46
NPIPB3-210ENST00000542817 SPDYE3A6NKU9 549 aa12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 H3BQV1 296 aa12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 MEIS1O00470 390 aa12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 ADCY6O43306 1168 aa12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 TDP2O95551 362 aa12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 ZSCAN22P10073 491 aaPredicted RBP12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 PTGS1P23219 599 aa12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 HOXD10P28358 340 aa12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 PRMT2P55345 433 aa12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 NBR1Q14596 966 aa12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 IFFO2Q5TF58 517 aa12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 CTU1Q7Z7A3 348 aaKnown RBP12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 PXYLP1Q8TE99 480 aa12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 CHAMP1Q96JM3 812 aa12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 INPP4AQ96PE3 977 aaPredicted RBP12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 PDGFCQ9NRA1 345 aa12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 ADD3Q9UEY8 706 aaKnown RBP12.18□□□□□ -0.46
NPIPB3-210ENST00000542817 CCDC194A0A1B0GVG4 234 aa12.17□□□□□ -0.46
NPIPB3-210ENST00000542817 RBM47A0AV96 593 aaKnown RBP12.17□□□□□ -0.46
NPIPB3-210ENST00000542817 SLC37A4O43826 429 aa12.17□□□□□ -0.46
NPIPB3-210ENST00000542817 ADCY3O60266 1144 aa12.17□□□□□ -0.46
NPIPB3-210ENST00000542817 EIF3JO75822 258 aaKnown RBP12.17□□□□□ -0.46
NPIPB3-210ENST00000542817 ARIH2O95376 493 aa12.17□□□□□ -0.46
NPIPB3-210ENST00000542817 F13A1P00488 732 aa12.17□□□□□ -0.46
NPIPB3-210ENST00000542817 USP11P51784 963 aa12.17□□□□□ -0.46
NPIPB3-210ENST00000542817 SP2Q02086 613 aa12.17□□□□□ -0.46
NPIPB3-210ENST00000542817 CACNB2Q08289 660 aaPredicted RBP12.17□□□□□ -0.46
NPIPB3-210ENST00000542817 NONOQ15233 471 aaKnown RBP eCLIP12.17□□□□□ -0.46
NPIPB3-210ENST00000542817 SAFBQ15424 915 aaKnown RBP eCLIP12.17□□□□□ -0.46
NPIPB3-210ENST00000542817 MCTP2Q6DN12 878 aa12.17□□□□□ -0.46
NPIPB3-210ENST00000542817 CCDC62Q6P9F0 684 aa12.17□□□□□ -0.46
NPIPB3-210ENST00000542817 C4orf32Q8N8J7 132 aa12.17□□□□□ -0.46
NPIPB3-210ENST00000542817 BCAS3Q9H6U6 928 aa12.17□□□□□ -0.46
NPIPB3-210ENST00000542817 ASB14A6NK59 587 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 ATP9AO75110 1047 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 ARP10275 920 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 MYCLP12524 364 aaPredicted RBP12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 CYBAP13498 195 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 CEP55Q53EZ4 464 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 FOXD4L5Q5VV16 416 aaPredicted RBP12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 MYSM1Q5VVJ2 828 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 MCTP1Q6DN14 999 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 XRRA1Q6P2D8 792 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 NEK8Q86SG6 692 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 FBXO16Q8IX29 292 aaPredicted RBP12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 FOXD4L4Q8WXT5 416 aaPredicted RBP12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 MXRA8Q9BRK3 442 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 WDR11Q9BZH6 1224 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 FTOQ9C0B1 505 aaKnown RBP eCLIP12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 TMEM60Q9H2L4 133 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 BRMS1Q9HCU9 246 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 JADE2Q9NQC1 790 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 SLC5A4Q9NY91 659 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 RTEL1Q9NZ71 1219 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 TELO2Q9Y4R8 837 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 PCDHB6Q9Y5E3 794 aa12.16□□□□□ -0.46
NPIPB3-210ENST00000542817 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 SPATA31C2B4DYI2 1134 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 CCND2P30279 289 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 ICAM3P32942 547 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 TRAPPC10P48553 1259 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 ACVR2BQ13705 512 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 ARHGEF6Q15052 776 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 STXBP2Q15833 593 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 Q4G0T1 1027 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 PPP4R3AQ6IN85 833 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 MOXD1Q6UVY6 613 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 EEPD1Q7L9B9 569 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 BRAPQ7Z569 592 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 ETNPPLQ8TBG4 499 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 RAET1EQ8TD07 263 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 SH3TC2Q8TF17 1288 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 HAS1Q92839 578 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 MRVI1Q9Y6F6 885 aa12.15□□□□□ -0.46
NPIPB3-210ENST00000542817 MSH4O15457 936 aa12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 DHX15O43143 795 aaKnown RBP12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 HMGCRP04035 888 aa12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 INHAP05111 366 aa12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 PDIA4P13667 645 aaKnown RBP12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 PRKAR2AP13861 404 aaKnown RBP12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 KCNA2P16389 499 aa12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 CCND3P30281 292 aaPredicted RBP12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 GRK4P32298 578 aa12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 PDE4DQ08499 809 aa12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 ITGB3BPQ13352 177 aaPredicted RBP12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 PTPAQ15257 358 aa12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 ZNF174Q15697 407 aa12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 LETM2Q2VYF4 491 aa12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 FBXO46Q6PJ61 603 aaPredicted RBP12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 NIPA1Q7RTP0 329 aa12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 TRMT44Q8IYL2 757 aaKnown RBP12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 SLAIN1Q8ND83 568 aa12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 GJA10Q969M2 543 aa12.14□□□□□ -0.47
NPIPB3-210ENST00000542817 MTMR9Q96QG7 549 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms