RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 DUSP11O75319 330 aaKnown RBP14.26□□□□□ -0.13
VPS33A-207ENST00000542790 FARP2O94887 1054 aaPredicted RBP14.26□□□□□ -0.13
VPS33A-207ENST00000542790 EIF2AK2P19525 551 aaKnown RBP14.26□□□□□ -0.13
VPS33A-207ENST00000542790 MLLT1Q03111 559 aaPredicted RBP14.26□□□□□ -0.13
VPS33A-207ENST00000542790 TNFAIP2Q03169 654 aa14.26□□□□□ -0.13
VPS33A-207ENST00000542790 SSRP1Q08945 709 aaKnown RBP14.26□□□□□ -0.13
VPS33A-207ENST00000542790 SCRN1Q12765 414 aa14.26□□□□□ -0.13
VPS33A-207ENST00000542790 ANO1Q5XXA6 986 aa14.26□□□□□ -0.13
VPS33A-207ENST00000542790 IQSEC1Q6DN90 963 aa14.26□□□□□ -0.13
VPS33A-207ENST00000542790 TAPT1Q6NXT6 567 aa14.26□□□□□ -0.13
VPS33A-207ENST00000542790 USP17L6PQ6QN14 398 aa14.26□□□□□ -0.13
VPS33A-207ENST00000542790 FBXO16Q8IX29 292 aaPredicted RBP14.26□□□□□ -0.13
VPS33A-207ENST00000542790 CCDC12Q8WUD4 166 aaPredicted RBP14.26□□□□□ -0.13
VPS33A-207ENST00000542790 BACH2Q9BYV9 841 aa14.26□□□□□ -0.13
VPS33A-207ENST00000542790 XPNPEP3Q9NQH7 507 aa14.26□□□□□ -0.13
VPS33A-207ENST00000542790 DDX49Q9Y6V7 483 aaKnown RBP14.26□□□□□ -0.13
VPS33A-207ENST00000542790 SMCO2A6NFE2 343 aa14.25□□□□□ -0.13
VPS33A-207ENST00000542790 STXBP3O00186 592 aa14.25□□□□□ -0.13
VPS33A-207ENST00000542790 EIF3JO75822 258 aaKnown RBP14.25□□□□□ -0.13
VPS33A-207ENST00000542790 NR3C2P08235 984 aa14.25□□□□□ -0.13
VPS33A-207ENST00000542790 RABEP1Q15276 862 aa14.25□□□□□ -0.13
VPS33A-207ENST00000542790 NOL8Q76FK4 1167 aaKnown RBP14.25□□□□□ -0.13
VPS33A-207ENST00000542790 NECAB2Q7Z6G3 386 aa14.25□□□□□ -0.13
VPS33A-207ENST00000542790 UBE2Q1Q7Z7E8 422 aa14.25□□□□□ -0.13
VPS33A-207ENST00000542790 PDCD2LQ9BRP1 358 aa14.25□□□□□ -0.13
VPS33A-207ENST00000542790 SPC25Q9HBM1 224 aa14.25□□□□□ -0.13
VPS33A-207ENST00000542790 RIC8AQ9NPQ8 531 aa14.25□□□□□ -0.13
VPS33A-207ENST00000542790 LIMCH1Q9UPQ0 1083 aa14.25□□□□□ -0.13
VPS33A-207ENST00000542790 RBM47A0AV96 593 aaKnown RBP14.24□□□□□ -0.13
VPS33A-207ENST00000542790 SPDYE3A6NKU9 549 aa14.24□□□□□ -0.13
VPS33A-207ENST00000542790 DNM1LO00429 736 aa14.24□□□□□ -0.13
VPS33A-207ENST00000542790 DEXIO95424 95 aa14.24□□□□□ -0.13
VPS33A-207ENST00000542790 ADCYAP1R1P41586 468 aa14.24□□□□□ -0.13
VPS33A-207ENST00000542790 ADCY7P51828 1080 aa14.24□□□□□ -0.13
VPS33A-207ENST00000542790 PGM5Q15124 567 aa14.24□□□□□ -0.13
VPS33A-207ENST00000542790 PKN1Q16512 942 aa14.24□□□□□ -0.13
VPS33A-207ENST00000542790 ME3Q16798 604 aa14.24□□□□□ -0.13
VPS33A-207ENST00000542790 TYW1BQ6NUM6 668 aa14.24□□□□□ -0.13
VPS33A-207ENST00000542790 RNF180Q86T96 592 aa14.24□□□□□ -0.13
VPS33A-207ENST00000542790 VSIG10LQ86VR7 867 aa14.24□□□□□ -0.13
VPS33A-207ENST00000542790 SCFD2Q8WU76 684 aa14.24□□□□□ -0.13
VPS33A-207ENST00000542790 BBXQ8WY36 941 aaPredicted RBP14.24□□□□□ -0.13
VPS33A-207ENST00000542790 PAWRQ96IZ0 340 aaKnown RBP14.24□□□□□ -0.13
VPS33A-207ENST00000542790 TBC1D32Q96NH3 1257 aa14.24□□□□□ -0.13
VPS33A-207ENST00000542790 WDR11Q9BZH6 1224 aa14.24□□□□□ -0.13
VPS33A-207ENST00000542790 PDGFCQ9NRA1 345 aa14.24□□□□□ -0.13
VPS33A-207ENST00000542790 Q9Y3F1 56 aa14.24□□□□□ -0.13
VPS33A-207ENST00000542790 ESYT2A0FGR8 921 aa14.23□□□□□ -0.13
VPS33A-207ENST00000542790 KBTBD13C9JR72 458 aa14.23□□□□□ -0.13
VPS33A-207ENST00000542790 PPFIA3O75145 1194 aa14.23□□□□□ -0.13
VPS33A-207ENST00000542790 PGK1P00558 417 aa14.23□□□□□ -0.13
VPS33A-207ENST00000542790 FOSP01100 380 aaPredicted RBP14.23□□□□□ -0.13
VPS33A-207ENST00000542790 MYCLP12524 364 aaPredicted RBP14.23□□□□□ -0.13
VPS33A-207ENST00000542790 SMPD1P17405 629 aa14.23□□□□□ -0.13
VPS33A-207ENST00000542790 GNA11P29992 359 aa14.23□□□□□ -0.13
VPS33A-207ENST00000542790 CCND2P30279 289 aa14.23□□□□□ -0.13
VPS33A-207ENST00000542790 LRRC41Q15345 812 aa14.23□□□□□ -0.13
VPS33A-207ENST00000542790 DUSP28Q4G0W2 176 aa14.23□□□□□ -0.13
VPS33A-207ENST00000542790 GJC2Q5T442 439 aaPredicted RBP14.23□□□□□ -0.13
VPS33A-207ENST00000542790 XRRA1Q6P2D8 792 aa14.23□□□□□ -0.13
VPS33A-207ENST00000542790 GTF3C6Q969F1 213 aa14.23□□□□□ -0.13
VPS33A-207ENST00000542790 ZSCAN31Q96LW9 406 aaPredicted RBP14.23□□□□□ -0.13
VPS33A-207ENST00000542790 AP5M1Q9H0R1 490 aa14.23□□□□□ -0.13
VPS33A-207ENST00000542790 C11orf49Q9H6J7 331 aa14.23□□□□□ -0.13
VPS33A-207ENST00000542790 C6orf50Q9HD87 102 aa14.23□□□□□ -0.13
VPS33A-207ENST00000542790 SH3GLB2Q9NR46 395 aa14.23□□□□□ -0.13
VPS33A-207ENST00000542790 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.22□□□□□ -0.13
VPS33A-207ENST00000542790 NKRFO15226 690 aaKnown RBP eCLIP14.22□□□□□ -0.13
VPS33A-207ENST00000542790 ADAMTS4O75173 837 aa14.22□□□□□ -0.13
VPS33A-207ENST00000542790 STAM2O75886 525 aa14.22□□□□□ -0.13
VPS33A-207ENST00000542790 TXNP10599 105 aaKnown RBP14.22□□□□□ -0.13
VPS33A-207ENST00000542790 GJA9P57773 515 aa14.22□□□□□ -0.13
VPS33A-207ENST00000542790 TTLL4Q14679 1199 aa14.22□□□□□ -0.13
VPS33A-207ENST00000542790 UBE2SQ16763 222 aa14.22□□□□□ -0.13
VPS33A-207ENST00000542790 MCTP2Q6DN12 878 aa14.22□□□□□ -0.13
VPS33A-207ENST00000542790 SEPT14Q6ZU15 432 aa14.22□□□□□ -0.13
VPS33A-207ENST00000542790 FAM177A1Q8N128 213 aaPredicted RBP14.22□□□□□ -0.13
VPS33A-207ENST00000542790 NECAB1Q8N987 351 aa14.22□□□□□ -0.13
VPS33A-207ENST00000542790 CCDC148Q8NFR7 591 aa14.22□□□□□ -0.13
VPS33A-207ENST00000542790 DIS3LQ8TF46 1054 aaKnown RBP14.22□□□□□ -0.13
VPS33A-207ENST00000542790 MARVELD3Q96A59 401 aa14.22□□□□□ -0.13
VPS33A-207ENST00000542790 LENG1Q96BZ8 264 aaPredicted RBP14.22□□□□□ -0.13
VPS33A-207ENST00000542790 HTATIP2Q9BUP3 242 aa14.22□□□□□ -0.13
VPS33A-207ENST00000542790 ZMYND12Q9H0C1 365 aa14.22□□□□□ -0.13
VPS33A-207ENST00000542790 EHMT1Q9H9B1 1298 aa14.22□□□□□ -0.13
VPS33A-207ENST00000542790 PCDHA6Q9UN73 950 aa14.22□□□□□ -0.13
VPS33A-207ENST00000542790 GNEQ9Y223 722 aaKnown RBP14.22□□□□□ -0.13
VPS33A-207ENST00000542790 PCDHA8Q9Y5H6 950 aa14.22□□□□□ -0.13
VPS33A-207ENST00000542790 FRMPD4Q14CM0 1322 aa14.21□□□□□ -0.13
VPS33A-207ENST00000542790 STK36Q9NRP7 1315 aa14.21□□□□□ -0.13
VPS33A-207ENST00000542790 SYNRGQ9UMZ2 1314 aa14.21□□□□□ -0.13
VPS33A-207ENST00000542790 DYNC1LI2O43237 492 aaPredicted RBP14.21□□□□□ -0.13
VPS33A-207ENST00000542790 ADCY6O43306 1168 aa14.21□□□□□ -0.13
VPS33A-207ENST00000542790 C6orf222P0C671 652 aaPredicted RBP14.21□□□□□ -0.13
VPS33A-207ENST00000542790 COL6A1P12109 1028 aa14.21□□□□□ -0.13
VPS33A-207ENST00000542790 NKX3-2P78367 333 aa14.21□□□□□ -0.13
VPS33A-207ENST00000542790 PCNX4Q63HM2 1172 aa14.21□□□□□ -0.13
VPS33A-207ENST00000542790 KCNV1Q6PIU1 500 aa14.21□□□□□ -0.13
VPS33A-207ENST00000542790 TLK2Q86UE8 772 aa14.21□□□□□ -0.13
VPS33A-207ENST00000542790 PCSK9Q8NBP7 692 aaKnown RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms