RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 JMYQ8N9B5 988 aa4.74□□□□□ -1.65
USP28-210ENST00000542033 PEX11GQ96HA9 241 aa4.74□□□□□ -1.65
USP28-210ENST00000542033 TMEM169Q96HH4 297 aa4.74□□□□□ -1.65
USP28-210ENST00000542033 SIGLEC10Q96LC7 697 aa4.74□□□□□ -1.65
USP28-210ENST00000542033 CNOT6Q9ULM6 557 aaKnown RBP4.74□□□□□ -1.65
USP28-210ENST00000542033 NPFFR2Q9Y5X5 522 aa4.74□□□□□ -1.65
USP28-210ENST00000542033 IRAK3Q9Y616 596 aa4.74□□□□□ -1.65
USP28-210ENST00000542033 C22orf46C9J442 243 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 ARNTLO00327 626 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 AQP7O14520 342 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 ZBTB7AO95365 584 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 KRT1P04264 644 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 LCP1P13796 627 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 LINC00310P59036 64 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 GABREP78334 506 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 SLC9A5Q14940 896 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 TARBP2Q15633 366 aaKnown RBP4.73□□□□□ -1.65
USP28-210ENST00000542033 NTRK3Q16288 839 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 KRTAP19-4Q3LI73 84 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 ZNF385BQ569K4 471 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 WWC2Q6AWC2 1192 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 STYK1Q6J9G0 422 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 KCNT2Q6UVM3 1135 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 MAMDC2Q7Z304 686 aaPredicted RBP4.73□□□□□ -1.65
USP28-210ENST00000542033 DCP2Q8IU60 420 aaKnown RBP4.73□□□□□ -1.65
USP28-210ENST00000542033 TEX2Q8IWB9 1127 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 IFNL3Q8IZI9 196 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 MZB1Q8WU39 189 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 DPF3Q92784 378 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 PTPRN2Q92932 1015 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 TRMT2BQ96GJ1 504 aaKnown RBP4.73□□□□□ -1.65
USP28-210ENST00000542033 ZFYVE21Q9BQ24 234 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 ALG1Q9BT22 464 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 MTA3Q9BTC8 594 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 SGPP1Q9BX95 441 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 CNTD2Q9H8S5 307 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 GCM1Q9NP62 436 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 CLDND1Q9NY35 253 aa4.73□□□□□ -1.65
USP28-210ENST00000542033 COA3Q9Y2R0 106 aaPredicted RBP4.73□□□□□ -1.65
USP28-210ENST00000542033 ZC3H12DA2A288 527 aaKnown RBP4.72□□□□□ -1.65
USP28-210ENST00000542033 H7BY64 318 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 NUAK1O60285 661 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 PPP1R11O60927 126 aaPredicted RBP4.72□□□□□ -1.65
USP28-210ENST00000542033 NAT1P18440 290 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 FPR2P25090 351 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 CANXP27824 592 aaKnown RBP4.72□□□□□ -1.65
USP28-210ENST00000542033 CDR1P51861 262 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 GPR85P60893 370 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 JAG1P78504 1218 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 KIZQ2M2Z5 673 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 MROH9Q5TGP6 573 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 LDHDQ86WU2 507 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 HOMER1Q86YM7 354 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 TMEM151BQ8IW70 566 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 LRRC56Q8IYG6 542 aaPredicted RBP4.72□□□□□ -1.65
USP28-210ENST00000542033 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.72□□□□□ -1.65
USP28-210ENST00000542033 APPBP2Q92624 585 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 KISS1RQ969F8 398 aaPredicted RBP4.72□□□□□ -1.65
USP28-210ENST00000542033 TSPAN17Q96FV3 270 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 RNPC3Q96LT9 517 aaKnown RBP4.72□□□□□ -1.65
USP28-210ENST00000542033 AP5M1Q9H0R1 490 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 NDOR1Q9UHB4 597 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 TMA7Q9Y2S6 64 aaKnown RBP4.72□□□□□ -1.65
USP28-210ENST00000542033 TRAF6Q9Y4K3 522 aa4.72□□□□□ -1.65
USP28-210ENST00000542033 MRPL42Q9Y6G3 142 aaKnown RBP4.72□□□□□ -1.65
USP28-210ENST00000542033 ESYT3A0FGR9 886 aa4.71□□□□□ -1.66
USP28-210ENST00000542033 MSCO60682 206 aa4.71□□□□□ -1.66
USP28-210ENST00000542033 EFCAB14O75071 495 aa4.71□□□□□ -1.66
USP28-210ENST00000542033 NTRK1P04629 796 aa4.71□□□□□ -1.66
USP28-210ENST00000542033 HSP90B1P14625 803 aaKnown RBP4.71□□□□□ -1.66
USP28-210ENST00000542033 PRR5P85299 388 aa4.71□□□□□ -1.66
USP28-210ENST00000542033 ZNF200P98182 395 aaPredicted RBP4.71□□□□□ -1.66
USP28-210ENST00000542033 SQSTM1Q13501 440 aa4.71□□□□□ -1.66
USP28-210ENST00000542033 CHRNA2Q15822 529 aa4.71□□□□□ -1.66
USP28-210ENST00000542033 LBX2Q6XYB7 198 aa4.71□□□□□ -1.66
USP28-210ENST00000542033 MTDHQ86UE4 582 aaKnown RBP4.71□□□□□ -1.66
USP28-210ENST00000542033 RIOX2Q8IUF8 465 aa4.71□□□□□ -1.66
USP28-210ENST00000542033 PLEKHO2Q8TD55 490 aa4.71□□□□□ -1.66
USP28-210ENST00000542033 ALG3Q92685 438 aa4.71□□□□□ -1.66
USP28-210ENST00000542033 PUS7Q96PZ0 661 aaKnown RBP4.71□□□□□ -1.66
USP28-210ENST00000542033 RNF38Q9H0F5 515 aa4.71□□□□□ -1.66
USP28-210ENST00000542033 KANSL2Q9H9L4 492 aa4.71□□□□□ -1.66
USP28-210ENST00000542033 TMEM260Q9NX78 707 aa4.71□□□□□ -1.66
USP28-210ENST00000542033 SFMBT1Q9UHJ3 866 aa4.71□□□□□ -1.66
USP28-210ENST00000542033 KCTD3Q9Y597 815 aa4.71□□□□□ -1.66
USP28-210ENST00000542033 BUB1BO60566 1050 aaPredicted RBP4.7□□□□□ -1.66
USP28-210ENST00000542033 CDC45O75419 566 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 DGKIO75912 1065 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 ASMTLO95671 621 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 C6orf222P0C671 652 aaPredicted RBP4.7□□□□□ -1.66
USP28-210ENST00000542033 NCAM1P13591 858 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 GRK2P25098 689 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 CFPP27918 469 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 GRK3P35626 688 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 SLC6A11P48066 632 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 EPHB3P54753 998 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 GUCY1A3Q02108 690 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 TCEA2Q15560 299 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 JAZF1Q86VZ6 243 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 NLRP10Q86W26 655 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms