RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ZNF362Q5T0B9 420 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-214ENST00000540539 RUFY4Q6ZNE9 571 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 BARGINQ6ZT62 677 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 ARHGAP27Q6ZUM4 889 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 CPLX4Q7Z7G2 160 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 TRIM50Q86XT4 487 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 CCDC197Q8NCU1 140 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 RUBCNQ92622 972 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 PTPRN2Q92932 1015 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 PPP2R3CQ969Q6 453 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 CLMNQ96JQ2 1002 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 CDCA7Q9BWT1 371 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-214ENST00000540539 ATP8A2Q9NTI2 1148 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 HSFX1Q9UBD0 423 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 ATRNO75882 1429 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 IGF2BP3O00425 579 aaKnown RBP eCLIP10.38□□□□□ -0.75
CLIP1-214ENST00000540539 MFAP3LO75121 409 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 BAG3O95817 575 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 ZNF18P17022 549 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 PSMD7P51665 324 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 NLRP5P59047 1200 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 NCALDP61601 193 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 SULT2A1Q06520 285 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 FOXD4Q12950 439 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-214ENST00000540539 ANKRD1Q15327 319 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 FAM98CQ17RN3 349 aaKnown RBP10.38□□□□□ -0.75
CLIP1-214ENST00000540539 CREB3L3Q68CJ9 461 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 MCM10Q7L590 875 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 ILDR1Q86SU0 546 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-214ENST00000540539 ZNF554Q86TJ5 538 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 ARHGAP18Q8N392 663 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 NOC3LQ8WTT2 800 aaKnown RBP10.38□□□□□ -0.75
CLIP1-214ENST00000540539 GJD4Q96KN9 370 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-214ENST00000540539 QTRT2Q9H974 415 aaKnown RBP10.38□□□□□ -0.75
CLIP1-214ENST00000540539 RABL2AQ9UBK7 228 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-214ENST00000540539 GUCA1BQ9UMX6 200 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 MYH7P12883 1935 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 SHANK3Q9BYB0 1731 aa10.38□□□□□ -0.75
CLIP1-214ENST00000540539 HTR3EA5X5Y0 456 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 AKR1B10O60218 316 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 PAEPP09466 180 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 MYCLP1P12525 358 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-214ENST00000540539 CCNFP41002 786 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 ERVK-24P63145 666 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 PDE4BQ07343 736 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 CNPY1Q3B7I2 92 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 PACS1Q6VY07 963 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 CCNJLQ8IV13 435 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 PI4K2BQ8TCG2 481 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 FAM136AQ96C01 138 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 NLRP3Q96P20 1036 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 LUC7LQ9NQ29 371 aaKnown RBP10.37□□□□□ -0.75
CLIP1-214ENST00000540539 RMND1Q9NWS8 449 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 NKX1-2Q9UD57 310 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-214ENST00000540539 SCOCQ9UIL1 159 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 R3HDM2Q9Y2K5 976 aaKnown RBP10.37□□□□□ -0.75
CLIP1-214ENST00000540539 PHKG2P15735 406 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 ACADSP16219 412 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 CDC27P30260 824 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 CD97P48960 835 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 GUCY2DQ02846 1103 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 NSUN2Q08J23 767 aaKnown RBP eCLIP10.37□□□□□ -0.75
CLIP1-214ENST00000540539 LSAMPQ13449 338 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 NR1I3Q14994 352 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 NAA16Q6N069 864 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-214ENST00000540539 KANK3Q6NY19 840 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 PPFIBP1Q86W92 1011 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 IFNL2Q8IZJ0 200 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 MMGT1Q8N4V1 131 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 UHMK1Q8TAS1 419 aaKnown RBP10.37□□□□□ -0.75
CLIP1-214ENST00000540539 DEPTORQ8TB45 409 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 SNRNP27Q8WVK2 155 aaKnown RBP10.37□□□□□ -0.75
CLIP1-214ENST00000540539 WDR60Q8WVS4 1066 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 PPP1R14BQ96C90 147 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 DUSP9Q99956 384 aaKnown RBP10.37□□□□□ -0.75
CLIP1-214ENST00000540539 FAM192AQ9GZU8 254 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 ETNK2Q9NVF9 386 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 ZNF180Q9UJW8 692 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 SLC4A7Q9Y6M7 1214 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 PCDH11XQ9BZA7 1347 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 PCDH11YQ9BZA8 1340 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 GLI3P10071 1580 aa10.37□□□□□ -0.75
CLIP1-214ENST00000540539 A0A0J9YVX5 310 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 HIP1RO75146 1068 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 TRIM21P19474 475 aaKnown RBP10.36□□□□□ -0.75
CLIP1-214ENST00000540539 FECHP22830 423 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 FLT3P36888 993 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 ATP11AP98196 1134 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 DDB1Q16531 1140 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 SLC44A4Q53GD3 710 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 SH2D4BQ5SQS7 431 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 IRGCQ6NXR0 463 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 BLOC1S2Q6QNY1 142 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 OLFM4Q6UX06 510 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 MPRIPQ6WCQ1 1025 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 DZIP1Q86YF9 867 aaKnown RBP10.36□□□□□ -0.75
CLIP1-214ENST00000540539 KIF2BQ8N4N8 673 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 IL17REQ8NFR9 667 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 HIC2Q96JB3 615 aa10.36□□□□□ -0.75
CLIP1-214ENST00000540539 IL1RAPL2Q9NP60 686 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms