RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 VSIG10LQ86VR7 867 aa17.08■□□□□ 0.32
USP28-204ENST00000537642 POLR3EQ9NVU0 708 aa17.08■□□□□ 0.32
USP28-204ENST00000537642 RBM28Q9NW13 759 aaKnown RBP17.08■□□□□ 0.32
USP28-204ENST00000537642 TBX21Q9UL17 535 aa17.08■□□□□ 0.32
USP28-204ENST00000537642 FRMPD4Q14CM0 1322 aa17.07■□□□□ 0.32
USP28-204ENST00000537642 EPB41L2O43491 1005 aaKnown RBP17.07■□□□□ 0.32
USP28-204ENST00000537642 CD4P01730 458 aa17.07■□□□□ 0.32
USP28-204ENST00000537642 MYL3P08590 195 aa17.07■□□□□ 0.32
USP28-204ENST00000537642 ARHGAP1Q07960 439 aa17.07■□□□□ 0.32
USP28-204ENST00000537642 FUT2Q10981 343 aa17.07■□□□□ 0.32
USP28-204ENST00000537642 RTN1Q16799 776 aa17.07■□□□□ 0.32
USP28-204ENST00000537642 BLOC1S2Q6QNY1 142 aa17.07■□□□□ 0.32
USP28-204ENST00000537642 Q6ZUG5 572 aa17.07■□□□□ 0.32
USP28-204ENST00000537642 FAM217BQ9NTX9 383 aaPredicted RBP17.07■□□□□ 0.32
USP28-204ENST00000537642 DDX41Q9UJV9 622 aaKnown RBP17.07■□□□□ 0.32
USP28-204ENST00000537642 GOLGA8AA7E2F4 631 aa17.06■□□□□ 0.32
USP28-204ENST00000537642 GOLGA8BA8MQT2 603 aa17.06■□□□□ 0.32
USP28-204ENST00000537642 MEIS2O14770 477 aa17.06■□□□□ 0.32
USP28-204ENST00000537642 GH1P01241 217 aa17.06■□□□□ 0.32
USP28-204ENST00000537642 RAG1P15918 1043 aa17.06■□□□□ 0.32
USP28-204ENST00000537642 RPS6KB1P23443 525 aa17.06■□□□□ 0.32
USP28-204ENST00000537642 CDC27P30260 824 aa17.06■□□□□ 0.32
USP28-204ENST00000537642 CCND2P30279 289 aa17.06■□□□□ 0.32
USP28-204ENST00000537642 APOBRQ0VD83 1088 aa17.06■□□□□ 0.32
USP28-204ENST00000537642 BRDTQ58F21 947 aaPredicted RBP17.06■□□□□ 0.32
USP28-204ENST00000537642 USP17L6PQ6QN14 398 aa17.06■□□□□ 0.32
USP28-204ENST00000537642 AFG1LQ8WV93 481 aa17.06■□□□□ 0.32
USP28-204ENST00000537642 LRCH3Q96II8 777 aa17.06■□□□□ 0.32
USP28-204ENST00000537642 ZFP91Q96JP5 570 aaPredicted RBP17.06■□□□□ 0.32
USP28-204ENST00000537642 MTG1Q9BT17 334 aaPredicted RBP17.06■□□□□ 0.32
USP28-204ENST00000537642 USP26Q9BXU7 913 aa17.06■□□□□ 0.32
USP28-204ENST00000537642 MRVI1Q9Y6F6 885 aa17.06■□□□□ 0.32
USP28-204ENST00000537642 PIK3CDO00329 1044 aa17.05■□□□□ 0.32
USP28-204ENST00000537642 TLR3O15455 904 aaKnown RBP17.05■□□□□ 0.32
USP28-204ENST00000537642 CASTP20810 708 aaKnown RBP17.05■□□□□ 0.32
USP28-204ENST00000537642 RCAN1P53805 252 aa17.05■□□□□ 0.32
USP28-204ENST00000537642 FGD1P98174 961 aa17.05■□□□□ 0.32
USP28-204ENST00000537642 LRIT3Q3SXY7 679 aa17.05■□□□□ 0.32
USP28-204ENST00000537642 SMARCC2Q8TAQ2 1214 aa17.05■□□□□ 0.32
USP28-204ENST00000537642 CUL5Q93034 780 aa17.05■□□□□ 0.32
USP28-204ENST00000537642 SEZ6LQ9BYH1 1024 aa17.05■□□□□ 0.32
USP28-204ENST00000537642 B4GALT4O60513 344 aa17.04■□□□□ 0.32
USP28-204ENST00000537642 KPNA6O60684 536 aa17.04■□□□□ 0.32
USP28-204ENST00000537642 TIMP1P01033 207 aa17.04■□□□□ 0.32
USP28-204ENST00000537642 MMP3P08254 477 aa17.04■□□□□ 0.32
USP28-204ENST00000537642 PSMA5P28066 241 aa17.04■□□□□ 0.32
USP28-204ENST00000537642 MRPS9P82933 396 aaKnown RBP17.04■□□□□ 0.32
USP28-204ENST00000537642 HEATR3Q7Z4Q2 680 aa17.04■□□□□ 0.32
USP28-204ENST00000537642 FBXL16Q8N461 479 aa17.04■□□□□ 0.32
USP28-204ENST00000537642 GPKOWQ92917 476 aaPredicted RBP eCLIP17.04■□□□□ 0.32
USP28-204ENST00000537642 BRF1Q92994 677 aa17.04■□□□□ 0.32
USP28-204ENST00000537642 EMID1Q96A84 441 aaPredicted RBP17.04■□□□□ 0.32
USP28-204ENST00000537642 AGXT2Q9BYV1 514 aa17.04■□□□□ 0.32
USP28-204ENST00000537642 TRPV6Q9H1D0 765 aa17.04■□□□□ 0.32
USP28-204ENST00000537642 PSTPIP2Q9H939 334 aa17.04■□□□□ 0.32
USP28-204ENST00000537642 NAP1L2Q9ULW6 460 aaPredicted RBP17.04■□□□□ 0.32
USP28-204ENST00000537642 EPHB4P54760 987 aa17.03■□□□□ 0.32
USP28-204ENST00000537642 SHHQ15465 462 aa17.03■□□□□ 0.32
USP28-204ENST00000537642 NBPF20Q3BBV1 942 aa17.03■□□□□ 0.32
USP28-204ENST00000537642 C9orf50Q5SZB4 431 aa17.03■□□□□ 0.32
USP28-204ENST00000537642 WWC2Q6AWC2 1192 aa17.03■□□□□ 0.32
USP28-204ENST00000537642 PPP1R13LQ8WUF5 828 aa17.03■□□□□ 0.32
USP28-204ENST00000537642 ALDH8A1Q9H2A2 487 aaPredicted RBP17.03■□□□□ 0.32
USP28-204ENST00000537642 V9GY48 417 aaPredicted RBP17.03■□□□□ 0.32
USP28-204ENST00000537642 NID2Q14112 1375 aa17.02■□□□□ 0.32
USP28-204ENST00000537642 ADD1P35611 737 aaKnown RBP17.02■□□□□ 0.32
USP28-204ENST00000537642 METAP2P50579 478 aaKnown RBP eCLIP17.02■□□□□ 0.32
USP28-204ENST00000537642 SP2Q02086 613 aa17.02■□□□□ 0.32
USP28-204ENST00000537642 FPGSQ05932 587 aa17.02■□□□□ 0.32
USP28-204ENST00000537642 LAMC2Q13753 1193 aa17.02■□□□□ 0.32
USP28-204ENST00000537642 UBE2SQ16763 222 aa17.02■□□□□ 0.32
USP28-204ENST00000537642 MYSM1Q5VVJ2 828 aa17.02■□□□□ 0.32
USP28-204ENST00000537642 MFSD5Q6N075 450 aa17.02■□□□□ 0.32
USP28-204ENST00000537642 TYW1BQ6NUM6 668 aa17.02■□□□□ 0.32
USP28-204ENST00000537642 KCNV1Q6PIU1 500 aa17.02■□□□□ 0.32
USP28-204ENST00000537642 DHX37Q8IY37 1157 aaKnown RBP17.02■□□□□ 0.32
USP28-204ENST00000537642 INPP4AQ96PE3 977 aaPredicted RBP17.02■□□□□ 0.32
USP28-204ENST00000537642 PPP1R12CQ9BZL4 782 aa17.02■□□□□ 0.32
USP28-204ENST00000537642 ZSWIM6Q9HCJ5 1215 aa17.02■□□□□ 0.32
USP28-204ENST00000537642 DOCK5Q9H7D0 1870 aa17.01■□□□□ 0.31
USP28-204ENST00000537642 SORBS3O60504 671 aa17.01■□□□□ 0.31
USP28-204ENST00000537642 STAM2O75886 525 aa17.01■□□□□ 0.31
USP28-204ENST00000537642 GGPS1O95749 300 aa17.01■□□□□ 0.31
USP28-204ENST00000537642 TGFB3P10600 412 aa17.01■□□□□ 0.31
USP28-204ENST00000537642 UBA1P22314 1058 aaKnown RBP17.01■□□□□ 0.31
USP28-204ENST00000537642 ICAM3P32942 547 aa17.01■□□□□ 0.31
USP28-204ENST00000537642 CYP2C18P33260 490 aa17.01■□□□□ 0.31
USP28-204ENST00000537642 SEMA3FQ13275 785 aa17.01■□□□□ 0.31
USP28-204ENST00000537642 CELF3Q5SZQ8 465 aaKnown RBP17.01■□□□□ 0.31
USP28-204ENST00000537642 PCNX4Q63HM2 1172 aa17.01■□□□□ 0.31
USP28-204ENST00000537642 NFRKBQ6P4R8 1299 aa17.01■□□□□ 0.31
USP28-204ENST00000537642 RUFY3Q7L099 469 aa17.01■□□□□ 0.31
USP28-204ENST00000537642 PPTC7Q8NI37 304 aa17.01■□□□□ 0.31
USP28-204ENST00000537642 KAT2BQ92831 832 aa17.01■□□□□ 0.31
USP28-204ENST00000537642 TRMT13Q9NUP7 481 aaKnown RBP17.01■□□□□ 0.31
USP28-204ENST00000537642 RTEL1Q9NZ71 1219 aa17.01■□□□□ 0.31
USP28-204ENST00000537642 STXBP3O00186 592 aa17■□□□□ 0.31
USP28-204ENST00000537642 NAPAP54920 295 aa17■□□□□ 0.31
USP28-204ENST00000537642 DGKDQ16760 1214 aa17■□□□□ 0.31
USP28-204ENST00000537642 GNPTABQ3T906 1256 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms