RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 ARIH2O95376 493 aa15.22■□□□□ 0.03
RTN3-207ENST00000536011 NR3C2P08235 984 aa15.22■□□□□ 0.03
RTN3-207ENST00000536011 MMP3P08254 477 aa15.22■□□□□ 0.03
RTN3-207ENST00000536011 CYP2C9P11712 490 aa15.22■□□□□ 0.03
RTN3-207ENST00000536011 ACTN1P12814 892 aa15.22■□□□□ 0.03
RTN3-207ENST00000536011 IRX6P78412 446 aaPredicted RBP15.22■□□□□ 0.03
RTN3-207ENST00000536011 ARHGAP1Q07960 439 aa15.22■□□□□ 0.03
RTN3-207ENST00000536011 LAMC2Q13753 1193 aa15.22■□□□□ 0.03
RTN3-207ENST00000536011 DGKDQ16760 1214 aa15.22■□□□□ 0.03
RTN3-207ENST00000536011 LY6KQ17RY6 165 aa15.22■□□□□ 0.03
RTN3-207ENST00000536011 TMEM67Q5HYA8 995 aa15.22■□□□□ 0.03
RTN3-207ENST00000536011 OTOP2Q7RTS6 562 aa15.22■□□□□ 0.03
RTN3-207ENST00000536011 HOMER1Q86YM7 354 aa15.22■□□□□ 0.03
RTN3-207ENST00000536011 AFG1LQ8WV93 481 aa15.22■□□□□ 0.03
RTN3-207ENST00000536011 GAS2L1Q99501 681 aaPredicted RBP15.22■□□□□ 0.03
RTN3-207ENST00000536011 KATNAL1Q9BW62 490 aa15.22■□□□□ 0.03
RTN3-207ENST00000536011 KIAA1217Q5T5P2 1943 aa15.21■□□□□ 0.03
RTN3-207ENST00000536011 ZBBXA8MT70 800 aa15.21■□□□□ 0.03
RTN3-207ENST00000536011 GCOM1H8Y6P7 765 aaPredicted RBP15.21■□□□□ 0.03
RTN3-207ENST00000536011 POLR2MP0CAP2 368 aa15.21■□□□□ 0.03
RTN3-207ENST00000536011 KIF5BP33176 963 aa15.21■□□□□ 0.03
RTN3-207ENST00000536011 CHMP4BP1P59074 171 aa15.21■□□□□ 0.03
RTN3-207ENST00000536011 GRIN2CQ14957 1233 aa15.21■□□□□ 0.03
RTN3-207ENST00000536011 CASC1Q6TDU7 716 aa15.21■□□□□ 0.03
RTN3-207ENST00000536011 STOX1Q6ZVD7 989 aa15.21■□□□□ 0.03
RTN3-207ENST00000536011 CHST3Q7LGC8 479 aa15.21■□□□□ 0.03
RTN3-207ENST00000536011 SESTD1Q86VW0 696 aa15.21■□□□□ 0.03
RTN3-207ENST00000536011 MAP4K1Q92918 833 aa15.21■□□□□ 0.03
RTN3-207ENST00000536011 SCLYQ96I15 445 aa15.21■□□□□ 0.03
RTN3-207ENST00000536011 MTA3Q9BTC8 594 aa15.21■□□□□ 0.03
RTN3-207ENST00000536011 RIOX1Q9H6W3 641 aa15.21■□□□□ 0.03
RTN3-207ENST00000536011 VCANP13611 3396 aa15.21■□□□□ 0.03
RTN3-207ENST00000536011 CHD9Q3L8U1 2897 aa15.21■□□□□ 0.02
RTN3-207ENST00000536011 PNMA6FA0A0J9YX94 578 aa15.2■□□□□ 0.02
RTN3-207ENST00000536011 OPLAHO14841 1288 aa15.2■□□□□ 0.02
RTN3-207ENST00000536011 CCND2P30279 289 aa15.2■□□□□ 0.02
RTN3-207ENST00000536011 TROAPQ12815 778 aa15.2■□□□□ 0.02
RTN3-207ENST00000536011 PTGISQ16647 500 aa15.2■□□□□ 0.02
RTN3-207ENST00000536011 DHX37Q8IY37 1157 aaKnown RBP15.2■□□□□ 0.02
RTN3-207ENST00000536011 PPTC7Q8NI37 304 aa15.2■□□□□ 0.02
RTN3-207ENST00000536011 CTCFLQ8NI51 663 aaPredicted RBP15.2■□□□□ 0.02
RTN3-207ENST00000536011 CAGE1Q8TC20 777 aa15.2■□□□□ 0.02
RTN3-207ENST00000536011 PIGSQ96S52 555 aa15.2■□□□□ 0.02
RTN3-207ENST00000536011 MAP3K14Q99558 947 aa15.2■□□□□ 0.02
RTN3-207ENST00000536011 PDCD2LQ9BRP1 358 aa15.2■□□□□ 0.02
RTN3-207ENST00000536011 SLC28A3Q9HAS3 691 aa15.2■□□□□ 0.02
RTN3-207ENST00000536011 CXXC1Q9P0U4 656 aaPredicted RBP15.2■□□□□ 0.02
RTN3-207ENST00000536011 DDX41Q9UJV9 622 aaKnown RBP15.2■□□□□ 0.02
RTN3-207ENST00000536011 RBM8AQ9Y5S9 174 aaKnown RBP15.2■□□□□ 0.02
RTN3-207ENST00000536011 GRXCR1A8MXD5 290 aa15.19■□□□□ 0.02
RTN3-207ENST00000536011 PPP1R11O60927 126 aaPredicted RBP15.19■□□□□ 0.02
RTN3-207ENST00000536011 DDAH1O94760 285 aa15.19■□□□□ 0.02
RTN3-207ENST00000536011 PARNO95453 639 aaKnown RBP15.19■□□□□ 0.02
RTN3-207ENST00000536011 TGFB3P10600 412 aa15.19■□□□□ 0.02
RTN3-207ENST00000536011 MYCLP12524 364 aaPredicted RBP15.19■□□□□ 0.02
RTN3-207ENST00000536011 PBX2P40425 430 aa15.19■□□□□ 0.02
RTN3-207ENST00000536011 TMTC2Q8N394 836 aa15.19■□□□□ 0.02
RTN3-207ENST00000536011 C7orf31Q8N865 590 aa15.19■□□□□ 0.02
RTN3-207ENST00000536011 AFAP1L1Q8TED9 768 aa15.19■□□□□ 0.02
RTN3-207ENST00000536011 LZTS2Q9BRK4 669 aa15.19■□□□□ 0.02
RTN3-207ENST00000536011 TANC1Q9C0D5 1861 aa15.18■□□□□ 0.02
RTN3-207ENST00000536011 STAM2O75886 525 aa15.18■□□□□ 0.02
RTN3-207ENST00000536011 ATP2A2P16615 1042 aaKnown RBP15.18■□□□□ 0.02
RTN3-207ENST00000536011 HOXA13P31271 388 aaPredicted RBP15.18■□□□□ 0.02
RTN3-207ENST00000536011 MCM5P33992 734 aa15.18■□□□□ 0.02
RTN3-207ENST00000536011 GNAQP50148 359 aa15.18■□□□□ 0.02
RTN3-207ENST00000536011 PGM5Q15124 567 aa15.18■□□□□ 0.02
RTN3-207ENST00000536011 GNPTABQ3T906 1256 aa15.18■□□□□ 0.02
RTN3-207ENST00000536011 DEFB128Q7Z7B8 93 aa15.18■□□□□ 0.02
RTN3-207ENST00000536011 VSIG10LQ86VR7 867 aa15.18■□□□□ 0.02
RTN3-207ENST00000536011 MB21D2Q8IYB1 491 aaPredicted RBP15.18■□□□□ 0.02
RTN3-207ENST00000536011 RRP36Q96EU6 259 aaKnown RBP15.18■□□□□ 0.02
RTN3-207ENST00000536011 SEC63Q9UGP8 760 aaKnown RBP15.18■□□□□ 0.02
RTN3-207ENST00000536011 PCDHA11Q9Y5I1 949 aa15.18■□□□□ 0.02
RTN3-207ENST00000536011 BAIAP3O94812 1187 aa15.17■□□□□ 0.02
RTN3-207ENST00000536011 F2P00734 622 aa15.17■□□□□ 0.02
RTN3-207ENST00000536011 IQCF3P0C7M6 154 aa15.17■□□□□ 0.02
RTN3-207ENST00000536011 CALM1P0DP23 149 aa15.17■□□□□ 0.02
RTN3-207ENST00000536011 CALM2P0DP24 149 aa15.17■□□□□ 0.02
RTN3-207ENST00000536011 CALM3P0DP25 149 aa15.17■□□□□ 0.02
RTN3-207ENST00000536011 NFXL1Q6ZNB6 911 aa15.17■□□□□ 0.02
RTN3-207ENST00000536011 ZNF654Q8IZM8 581 aa15.17■□□□□ 0.02
RTN3-207ENST00000536011 IGDCC4Q8TDY8 1250 aa15.17■□□□□ 0.02
RTN3-207ENST00000536011 CUL5Q93034 780 aa15.17■□□□□ 0.02
RTN3-207ENST00000536011 TMEM87BQ96K49 555 aa15.17■□□□□ 0.02
RTN3-207ENST00000536011 SLC9A7Q96T83 725 aa15.17■□□□□ 0.02
RTN3-207ENST00000536011 SPZ1Q9BXG8 430 aa15.17■□□□□ 0.02
RTN3-207ENST00000536011 FTOQ9C0B1 505 aaKnown RBP eCLIP15.17■□□□□ 0.02
RTN3-207ENST00000536011 CCDC69A6NI79 296 aa15.16■□□□□ 0.02
RTN3-207ENST00000536011 PRC1O43663 620 aa15.16■□□□□ 0.02
RTN3-207ENST00000536011 CYTH3O43739 400 aa15.16■□□□□ 0.02
RTN3-207ENST00000536011 PPFIA4O75335 1185 aa15.16■□□□□ 0.02
RTN3-207ENST00000536011 GGPS1O95749 300 aa15.16■□□□□ 0.02
RTN3-207ENST00000536011 SMARCA1P28370 1054 aa15.16■□□□□ 0.02
RTN3-207ENST00000536011 PSEN2P49810 448 aa15.16■□□□□ 0.02
RTN3-207ENST00000536011 ANTXR2P58335 489 aa15.16■□□□□ 0.02
RTN3-207ENST00000536011 MFSD10Q14728 455 aa15.16■□□□□ 0.02
RTN3-207ENST00000536011 CELF3Q5SZQ8 465 aaKnown RBP15.16■□□□□ 0.02
RTN3-207ENST00000536011 PPP2R2DQ66LE6 453 aa15.16■□□□□ 0.02
RTN3-207ENST00000536011 FCHSD1Q86WN1 690 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms