RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 IGFBP4P22692 258 aa17.1■□□□□ 0.33
VPS28-215ENST00000531924 PTH1RQ03431 593 aa17.1■□□□□ 0.33
VPS28-215ENST00000531924 ARHGAP1Q07960 439 aa17.1■□□□□ 0.33
VPS28-215ENST00000531924 LAMC2Q13753 1193 aa17.1■□□□□ 0.33
VPS28-215ENST00000531924 PTGISQ16647 500 aa17.1■□□□□ 0.33
VPS28-215ENST00000531924 DHX37Q8IY37 1157 aaKnown RBP17.1■□□□□ 0.33
VPS28-215ENST00000531924 C7orf31Q8N865 590 aa17.1■□□□□ 0.33
VPS28-215ENST00000531924 CUL9Q8IWT3 2517 aa17.1■□□□□ 0.33
VPS28-215ENST00000531924 GCOM1H8Y6P7 765 aaPredicted RBP17.09■□□□□ 0.33
VPS28-215ENST00000531924 POLR2MP0CAP2 368 aa17.09■□□□□ 0.33
VPS28-215ENST00000531924 HOXA13P31271 388 aaPredicted RBP17.09■□□□□ 0.33
VPS28-215ENST00000531924 HSD17B4P51659 736 aa17.09■□□□□ 0.33
VPS28-215ENST00000531924 RABGGTBP53611 331 aa17.09■□□□□ 0.33
VPS28-215ENST00000531924 GRM4Q14833 912 aa17.09■□□□□ 0.33
VPS28-215ENST00000531924 TMEM67Q5HYA8 995 aa17.09■□□□□ 0.33
VPS28-215ENST00000531924 PPP2R2DQ66LE6 453 aa17.09■□□□□ 0.33
VPS28-215ENST00000531924 KCNV1Q6PIU1 500 aa17.09■□□□□ 0.33
VPS28-215ENST00000531924 SAMD3Q8N6K7 520 aa17.09■□□□□ 0.33
VPS28-215ENST00000531924 KATNAL1Q9BW62 490 aa17.09■□□□□ 0.33
VPS28-215ENST00000531924 DDX41Q9UJV9 622 aaKnown RBP17.09■□□□□ 0.33
VPS28-215ENST00000531924 PCDHA11Q9Y5I1 949 aa17.09■□□□□ 0.33
VPS28-215ENST00000531924 E7EWF7 191 aa17.08■□□□□ 0.32
VPS28-215ENST00000531924 IQCF3P0C7M6 154 aa17.08■□□□□ 0.32
VPS28-215ENST00000531924 FCHSD1Q86WN1 690 aa17.08■□□□□ 0.32
VPS28-215ENST00000531924 SYMPKQ92797 1274 aaKnown RBP17.08■□□□□ 0.32
VPS28-215ENST00000531924 PIGSQ96S52 555 aa17.08■□□□□ 0.32
VPS28-215ENST00000531924 YBX2Q9Y2T7 364 aaKnown RBP17.08■□□□□ 0.32
VPS28-215ENST00000531924 PNMA6FA0A0J9YX94 578 aa17.07■□□□□ 0.32
VPS28-215ENST00000531924 SGSM2O43147 1006 aa17.07■□□□□ 0.32
VPS28-215ENST00000531924 PPP1R11O60927 126 aaPredicted RBP17.07■□□□□ 0.32
VPS28-215ENST00000531924 CCND2P30279 289 aa17.07■□□□□ 0.32
VPS28-215ENST00000531924 STOX1Q6ZVD7 989 aa17.07■□□□□ 0.32
VPS28-215ENST00000531924 PPTC7Q8NI37 304 aa17.07■□□□□ 0.32
VPS28-215ENST00000531924 CAGE1Q8TC20 777 aa17.07■□□□□ 0.32
VPS28-215ENST00000531924 MTMR8Q96EF0 704 aa17.07■□□□□ 0.32
VPS28-215ENST00000531924 PDCD2LQ9BRP1 358 aa17.07■□□□□ 0.32
VPS28-215ENST00000531924 ALG1Q9BT22 464 aa17.07■□□□□ 0.32
VPS28-215ENST00000531924 KIF28PB7ZC32 967 aa17.06■□□□□ 0.32
VPS28-215ENST00000531924 KIF5BP33176 963 aa17.06■□□□□ 0.32
VPS28-215ENST00000531924 PSEN2P49810 448 aa17.06■□□□□ 0.32
VPS28-215ENST00000531924 MFSD10Q14728 455 aa17.06■□□□□ 0.32
VPS28-215ENST00000531924 GDF6Q6KF10 455 aaPredicted RBP17.06■□□□□ 0.32
VPS28-215ENST00000531924 CASC1Q6TDU7 716 aa17.06■□□□□ 0.32
VPS28-215ENST00000531924 SESTD1Q86VW0 696 aa17.06■□□□□ 0.32
VPS28-215ENST00000531924 CTCFLQ8NI51 663 aaPredicted RBP17.06■□□□□ 0.32
VPS28-215ENST00000531924 AFAP1L1Q8TED9 768 aa17.06■□□□□ 0.32
VPS28-215ENST00000531924 PIBF1Q8WXW3 757 aa17.06■□□□□ 0.32
VPS28-215ENST00000531924 EMID1Q96A84 441 aaPredicted RBP17.06■□□□□ 0.32
VPS28-215ENST00000531924 SPATA33Q96N06 139 aa17.06■□□□□ 0.32
VPS28-215ENST00000531924 SLC9A7Q96T83 725 aa17.06■□□□□ 0.32
VPS28-215ENST00000531924 RIOX1Q9H6W3 641 aa17.06■□□□□ 0.32
VPS28-215ENST00000531924 EYSQ5T1H1 3165 aa17.05■□□□□ 0.32
VPS28-215ENST00000531924 OPLAHO14841 1288 aa17.05■□□□□ 0.32
VPS28-215ENST00000531924 SORBS3O60504 671 aa17.05■□□□□ 0.32
VPS28-215ENST00000531924 ZNF286BP0CG31 522 aa17.05■□□□□ 0.32
VPS28-215ENST00000531924 MYOGP15173 224 aa17.05■□□□□ 0.32
VPS28-215ENST00000531924 KCNJ6P48051 423 aa17.05■□□□□ 0.32
VPS28-215ENST00000531924 GHRHRQ02643 423 aa17.05■□□□□ 0.32
VPS28-215ENST00000531924 PGM5Q15124 567 aa17.05■□□□□ 0.32
VPS28-215ENST00000531924 CCDC85BQ15834 202 aaPredicted RBP17.05■□□□□ 0.32
VPS28-215ENST00000531924 KIAA0753Q2KHM9 967 aa17.05■□□□□ 0.32
VPS28-215ENST00000531924 NFXL1Q6ZNB6 911 aa17.05■□□□□ 0.32
VPS28-215ENST00000531924 VSIG10LQ86VR7 867 aa17.05■□□□□ 0.32
VPS28-215ENST00000531924 USP38Q8NB14 1042 aa17.05■□□□□ 0.32
VPS28-215ENST00000531924 PHOSPHO2Q8TCD6 241 aa17.05■□□□□ 0.32
VPS28-215ENST00000531924 KAT2BQ92831 832 aa17.05■□□□□ 0.32
VPS28-215ENST00000531924 TSPYL2Q9H2G4 693 aaPredicted RBP17.05■□□□□ 0.32
VPS28-215ENST00000531924 MLXIPQ9HAP2 919 aa17.05■□□□□ 0.32
VPS28-215ENST00000531924 RBM8AQ9Y5S9 174 aaKnown RBP17.05■□□□□ 0.32
VPS28-215ENST00000531924 PPFIA4O75335 1185 aa17.04■□□□□ 0.32
VPS28-215ENST00000531924 BAIAP3O94812 1187 aa17.04■□□□□ 0.32
VPS28-215ENST00000531924 PARNO95453 639 aaKnown RBP17.04■□□□□ 0.32
VPS28-215ENST00000531924 GGPS1O95749 300 aa17.04■□□□□ 0.32
VPS28-215ENST00000531924 TGFB3P10600 412 aa17.04■□□□□ 0.32
VPS28-215ENST00000531924 SELPP16109 830 aa17.04■□□□□ 0.32
VPS28-215ENST00000531924 TROAPQ12815 778 aa17.04■□□□□ 0.32
VPS28-215ENST00000531924 GNPTABQ3T906 1256 aa17.04■□□□□ 0.32
VPS28-215ENST00000531924 CELF3Q5SZQ8 465 aaKnown RBP17.04■□□□□ 0.32
VPS28-215ENST00000531924 LRRC8DQ7L1W4 858 aa17.04■□□□□ 0.32
VPS28-215ENST00000531924 MAP4K1Q92918 833 aa17.04■□□□□ 0.32
VPS28-215ENST00000531924 CUL5Q93034 780 aa17.04■□□□□ 0.32
VPS28-215ENST00000531924 RRP36Q96EU6 259 aaKnown RBP17.04■□□□□ 0.32
VPS28-215ENST00000531924 SENP2Q9HC62 589 aa17.04■□□□□ 0.32
VPS28-215ENST00000531924 HDAC6Q9UBN7 1215 aa17.04■□□□□ 0.32
VPS28-215ENST00000531924 SEC63Q9UGP8 760 aaKnown RBP17.04■□□□□ 0.32
VPS28-215ENST00000531924 GTF2IRD1Q9UHL9 959 aa17.04■□□□□ 0.32
VPS28-215ENST00000531924 TJAP1Q5JTD0 557 aa17.03■□□□□ 0.32
VPS28-215ENST00000531924 MYSM1Q5VVJ2 828 aa17.03■□□□□ 0.32
VPS28-215ENST00000531924 MICALL1Q8N3F8 863 aa17.03■□□□□ 0.32
VPS28-215ENST00000531924 IL27Q8NEV9 243 aa17.03■□□□□ 0.32
VPS28-215ENST00000531924 SMARCC2Q8TAQ2 1214 aa17.03■□□□□ 0.32
VPS28-215ENST00000531924 VWCEQ96DN2 955 aa17.03■□□□□ 0.32
VPS28-215ENST00000531924 ZBED2Q9BTP6 218 aa17.03■□□□□ 0.32
VPS28-215ENST00000531924 TAF6LQ9Y6J9 622 aa17.03■□□□□ 0.32
VPS28-215ENST00000531924 PRUNE2Q8WUY3 3088 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 SCN10AQ9Y5Y9 1956 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 CDH23Q9H251 3354 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 CCDC69A6NI79 296 aa17.02■□□□□ 0.32
VPS28-215ENST00000531924 NOP56O00567 594 aaKnown RBP17.02■□□□□ 0.32
VPS28-215ENST00000531924 PRC1O43663 620 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms