RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 TROAPQ12815 778 aa18.33■□□□□ 0.52
CPSF1-205ENST00000531042 SART3Q15020 963 aaKnown RBP18.33■□□□□ 0.52
CPSF1-205ENST00000531042 CHST3Q7LGC8 479 aa18.33■□□□□ 0.52
CPSF1-205ENST00000531042 HOMER1Q86YM7 354 aa18.33■□□□□ 0.52
CPSF1-205ENST00000531042 MAP4K1Q92918 833 aa18.33■□□□□ 0.52
CPSF1-205ENST00000531042 PIGSQ96S52 555 aa18.33■□□□□ 0.52
CPSF1-205ENST00000531042 PDCD2LQ9BRP1 358 aa18.33■□□□□ 0.52
CPSF1-205ENST00000531042 MYH7BA7E2Y1 1941 aa18.32■□□□□ 0.52
CPSF1-205ENST00000531042 PITPNM1O00562 1244 aa18.32■□□□□ 0.52
CPSF1-205ENST00000531042 CYTH3O43739 400 aa18.32■□□□□ 0.52
CPSF1-205ENST00000531042 CASTP20810 708 aaKnown RBP18.32■□□□□ 0.52
CPSF1-205ENST00000531042 RFC2P35250 354 aa18.32■□□□□ 0.52
CPSF1-205ENST00000531042 CHMP4BP1P59074 171 aa18.32■□□□□ 0.52
CPSF1-205ENST00000531042 TRAF1Q13077 416 aa18.32■□□□□ 0.52
CPSF1-205ENST00000531042 DEFB128Q7Z7B8 93 aa18.32■□□□□ 0.52
CPSF1-205ENST00000531042 KAT2BQ92831 832 aa18.32■□□□□ 0.52
CPSF1-205ENST00000531042 EMID1Q96A84 441 aaPredicted RBP18.32■□□□□ 0.52
CPSF1-205ENST00000531042 COL25A1Q9BXS0 654 aaPredicted RBP18.32■□□□□ 0.52
CPSF1-205ENST00000531042 MRVI1Q9Y6F6 885 aa18.32■□□□□ 0.52
CPSF1-205ENST00000531042 SLC4A7Q9Y6M7 1214 aa18.32■□□□□ 0.52
CPSF1-205ENST00000531042 TANC1Q9C0D5 1861 aa18.32■□□□□ 0.52
CPSF1-205ENST00000531042 BAZ2BQ9UIF8 2168 aaKnown RBP18.31■□□□□ 0.52
CPSF1-205ENST00000531042 IQCF3P0C7M6 154 aa18.31■□□□□ 0.52
CPSF1-205ENST00000531042 HOXA13P31271 388 aaPredicted RBP18.31■□□□□ 0.52
CPSF1-205ENST00000531042 ANTXR2P58335 489 aa18.31■□□□□ 0.52
CPSF1-205ENST00000531042 BFSP2Q13515 415 aa18.31■□□□□ 0.52
CPSF1-205ENST00000531042 LAMC2Q13753 1193 aa18.31■□□□□ 0.52
CPSF1-205ENST00000531042 DGKDQ16760 1214 aa18.31■□□□□ 0.52
CPSF1-205ENST00000531042 TMEM67Q5HYA8 995 aa18.31■□□□□ 0.52
CPSF1-205ENST00000531042 VSIG10LQ86VR7 867 aa18.31■□□□□ 0.52
CPSF1-205ENST00000531042 SESTD1Q86VW0 696 aa18.31■□□□□ 0.52
CPSF1-205ENST00000531042 MB21D2Q8IYB1 491 aaPredicted RBP18.31■□□□□ 0.52
CPSF1-205ENST00000531042 RETREG2Q8NC44 543 aa18.31■□□□□ 0.52
CPSF1-205ENST00000531042 IGDCC4Q8TDY8 1250 aa18.31■□□□□ 0.52
CPSF1-205ENST00000531042 NKX2-4Q9H2Z4 354 aa18.31■□□□□ 0.52
CPSF1-205ENST00000531042 PRDM12Q9H4Q4 367 aa18.31■□□□□ 0.52
CPSF1-205ENST00000531042 NOD1Q9Y239 953 aa18.31■□□□□ 0.52
CPSF1-205ENST00000531042 YBX2Q9Y2T7 364 aaKnown RBP18.31■□□□□ 0.52
CPSF1-205ENST00000531042 RBM8AQ9Y5S9 174 aaKnown RBP18.31■□□□□ 0.52
CPSF1-205ENST00000531042 CHD7Q9P2D1 2997 aa18.31■□□□□ 0.52
CPSF1-205ENST00000531042 PNMA6FA0A0J9YX94 578 aa18.3■□□□□ 0.52
CPSF1-205ENST00000531042 ZBBXA8MT70 800 aa18.3■□□□□ 0.52
CPSF1-205ENST00000531042 RGS20O76081 388 aa18.3■□□□□ 0.52
CPSF1-205ENST00000531042 MYCLP12524 364 aaPredicted RBP18.3■□□□□ 0.52
CPSF1-205ENST00000531042 RABGGTBP53611 331 aa18.3■□□□□ 0.52
CPSF1-205ENST00000531042 PGM5Q15124 567 aa18.3■□□□□ 0.52
CPSF1-205ENST00000531042 PTGISQ16647 500 aa18.3■□□□□ 0.52
CPSF1-205ENST00000531042 GDF6Q6KF10 455 aaPredicted RBP18.3■□□□□ 0.52
CPSF1-205ENST00000531042 CATIPQ7Z7H3 387 aa18.3■□□□□ 0.52
CPSF1-205ENST00000531042 DHX37Q8IY37 1157 aaKnown RBP18.3■□□□□ 0.52
CPSF1-205ENST00000531042 GAS2L1Q99501 681 aaPredicted RBP18.3■□□□□ 0.52
CPSF1-205ENST00000531042 SLC28A3Q9HAS3 691 aa18.3■□□□□ 0.52
CPSF1-205ENST00000531042 GCOM1H8Y6P7 765 aaPredicted RBP18.29■□□□□ 0.52
CPSF1-205ENST00000531042 POLR2MP0CAP2 368 aa18.29■□□□□ 0.52
CPSF1-205ENST00000531042 ATP2A2P16615 1042 aaKnown RBP18.29■□□□□ 0.52
CPSF1-205ENST00000531042 KCNV1Q6PIU1 500 aa18.29■□□□□ 0.52
CPSF1-205ENST00000531042 IL31RAQ8NI17 732 aa18.29■□□□□ 0.52
CPSF1-205ENST00000531042 PPTC7Q8NI37 304 aa18.29■□□□□ 0.52
CPSF1-205ENST00000531042 CTAGE1Q96RT6 745 aa18.29■□□□□ 0.52
CPSF1-205ENST00000531042 PCDHA11Q9Y5I1 949 aa18.29■□□□□ 0.52
CPSF1-205ENST00000531042 TRIP12Q14669 1992 aaPredicted RBP18.29■□□□□ 0.52
CPSF1-205ENST00000531042 VCANP13611 3396 aa18.29■□□□□ 0.52
CPSF1-205ENST00000531042 ACTN1P12814 892 aa18.28■□□□□ 0.52
CPSF1-205ENST00000531042 MYSM1Q5VVJ2 828 aa18.28■□□□□ 0.52
CPSF1-205ENST00000531042 CCDC155Q8N6L0 562 aa18.28■□□□□ 0.52
CPSF1-205ENST00000531042 USP38Q8NB14 1042 aa18.28■□□□□ 0.52
CPSF1-205ENST00000531042 CAGE1Q8TC20 777 aa18.28■□□□□ 0.52
CPSF1-205ENST00000531042 MAP3K14Q99558 947 aa18.28■□□□□ 0.52
CPSF1-205ENST00000531042 LY9Q9HBG7 655 aa18.28■□□□□ 0.52
CPSF1-205ENST00000531042 GTF2IRD1Q9UHL9 959 aa18.28■□□□□ 0.52
CPSF1-205ENST00000531042 HAS3O00219 553 aa18.27■□□□□ 0.52
CPSF1-205ENST00000531042 F2P00734 622 aa18.27■□□□□ 0.52
CPSF1-205ENST00000531042 HOXD8P13378 290 aaPredicted RBP18.27■□□□□ 0.52
CPSF1-205ENST00000531042 MYOGP15173 224 aa18.27■□□□□ 0.52
CPSF1-205ENST00000531042 CCND2P30279 289 aa18.27■□□□□ 0.52
CPSF1-205ENST00000531042 PSEN2P49810 448 aa18.27■□□□□ 0.52
CPSF1-205ENST00000531042 SP2Q02086 613 aa18.27■□□□□ 0.52
CPSF1-205ENST00000531042 CELF3Q5SZQ8 465 aaKnown RBP18.27■□□□□ 0.52
CPSF1-205ENST00000531042 FCHSD1Q86WN1 690 aa18.27■□□□□ 0.52
CPSF1-205ENST00000531042 AFAP1L1Q8TED9 768 aa18.27■□□□□ 0.52
CPSF1-205ENST00000531042 ALG1Q9BT22 464 aa18.27■□□□□ 0.52
CPSF1-205ENST00000531042 MTA3Q9BTC8 594 aa18.27■□□□□ 0.52
CPSF1-205ENST00000531042 KATNAL1Q9BW62 490 aa18.27■□□□□ 0.52
CPSF1-205ENST00000531042 FTOQ9C0B1 505 aaKnown RBP eCLIP18.27■□□□□ 0.52
CPSF1-205ENST00000531042 HDAC6Q9UBN7 1215 aa18.27■□□□□ 0.52
CPSF1-205ENST00000531042 MYO9BQ13459 2157 aa18.26■□□□□ 0.51
CPSF1-205ENST00000531042 PPFIA4O75335 1185 aa18.26■□□□□ 0.51
CPSF1-205ENST00000531042 GGPS1O95749 300 aa18.26■□□□□ 0.51
CPSF1-205ENST00000531042 ZNF286BP0CG31 522 aa18.26■□□□□ 0.51
CPSF1-205ENST00000531042 TGFB3P10600 412 aa18.26■□□□□ 0.51
CPSF1-205ENST00000531042 ADGRE1Q14246 886 aa18.26■□□□□ 0.51
CPSF1-205ENST00000531042 MFSD10Q14728 455 aa18.26■□□□□ 0.51
CPSF1-205ENST00000531042 KIAA0753Q2KHM9 967 aa18.26■□□□□ 0.51
CPSF1-205ENST00000531042 HSDL1Q3SXM5 330 aa18.26■□□□□ 0.51
CPSF1-205ENST00000531042 ZNF654Q8IZM8 581 aa18.26■□□□□ 0.51
CPSF1-205ENST00000531042 C7orf31Q8N865 590 aa18.26■□□□□ 0.51
CPSF1-205ENST00000531042 PIBF1Q8WXW3 757 aa18.26■□□□□ 0.51
CPSF1-205ENST00000531042 DHX38Q92620 1227 aaKnown RBP18.26■□□□□ 0.51
CPSF1-205ENST00000531042 ZFP91Q96JP5 570 aaPredicted RBP18.26■□□□□ 0.51
CPSF1-205ENST00000531042 SPATA33Q96N06 139 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms