RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 SLF1Q9BQI6 1058 aa17.1■□□□□ 0.33
USH1C-207ENST00000527720 HAUS4Q9H6D7 363 aa17.1■□□□□ 0.33
USH1C-207ENST00000527720 ZNHIT6Q9NWK9 470 aaKnown RBP17.1■□□□□ 0.33
USH1C-207ENST00000527720 ZNF446Q9NWS9 450 aa17.1■□□□□ 0.33
USH1C-207ENST00000527720 PCDHA1Q9Y5I3 950 aa17.1■□□□□ 0.33
USH1C-207ENST00000527720 TNS1Q9HBL0 1735 aaKnown RBP17.1■□□□□ 0.33
USH1C-207ENST00000527720 A0A0U1RQJ8 604 aa17.1■□□□□ 0.33
USH1C-207ENST00000527720 KRT83P78385 493 aa17.1■□□□□ 0.33
USH1C-207ENST00000527720 CDK17Q00537 523 aa17.1■□□□□ 0.33
USH1C-207ENST00000527720 CDC37Q16543 378 aaPredicted RBP17.1■□□□□ 0.33
USH1C-207ENST00000527720 WDR59Q6PJI9 974 aa17.1■□□□□ 0.33
USH1C-207ENST00000527720 DYMQ7RTS9 669 aa17.1■□□□□ 0.33
USH1C-207ENST00000527720 SRGAP1Q7Z6B7 1085 aa17.1■□□□□ 0.33
USH1C-207ENST00000527720 CCDC170Q8IYT3 715 aa17.1■□□□□ 0.33
USH1C-207ENST00000527720 ATRIPQ8WXE1 791 aa17.1■□□□□ 0.33
USH1C-207ENST00000527720 CNKSR1Q969H4 720 aa17.1■□□□□ 0.33
USH1C-207ENST00000527720 GMCL1Q96IK5 515 aa17.1■□□□□ 0.33
USH1C-207ENST00000527720 NAPGQ99747 312 aaPredicted RBP17.1■□□□□ 0.33
USH1C-207ENST00000527720 NUDT12Q9BQG2 462 aa17.1■□□□□ 0.33
USH1C-207ENST00000527720 ATP8B1O43520 1251 aa17.09■□□□□ 0.33
USH1C-207ENST00000527720 ENTPD3O75355 529 aa17.09■□□□□ 0.33
USH1C-207ENST00000527720 CYLC1P35663 651 aaPredicted RBP17.09■□□□□ 0.33
USH1C-207ENST00000527720 ICA1Q05084 483 aa17.09■□□□□ 0.33
USH1C-207ENST00000527720 TMCO3Q6UWJ1 677 aa17.09■□□□□ 0.33
USH1C-207ENST00000527720 SH3BP5LQ7L8J4 393 aa17.09■□□□□ 0.33
USH1C-207ENST00000527720 SLC35F6Q8N357 371 aa17.09■□□□□ 0.33
USH1C-207ENST00000527720 KCNMB3Q9NPA1 279 aa17.09■□□□□ 0.33
USH1C-207ENST00000527720 BMP2KQ9NSY1 1161 aaPredicted RBP17.09■□□□□ 0.33
USH1C-207ENST00000527720 SYNPO2Q9UMS6 1093 aa17.09■□□□□ 0.33
USH1C-207ENST00000527720 KIF4BQ2VIQ3 1234 aa17.09■□□□□ 0.33
USH1C-207ENST00000527720 KCNK18Q7Z418 384 aa17.09■□□□□ 0.33
USH1C-207ENST00000527720 SLFN12Q8IYM2 578 aa17.09■□□□□ 0.33
USH1C-207ENST00000527720 TSG101Q99816 390 aa17.09■□□□□ 0.33
USH1C-207ENST00000527720 ANO3Q9BYT9 981 aa17.09■□□□□ 0.33
USH1C-207ENST00000527720 ATAD5Q96QE3 1844 aa17.08■□□□□ 0.33
USH1C-207ENST00000527720 CACNB3P54284 484 aa17.08■□□□□ 0.33
USH1C-207ENST00000527720 MAN2A1Q16706 1144 aa17.08■□□□□ 0.33
USH1C-207ENST00000527720 VWA3BQ502W6 1294 aa17.08■□□□□ 0.33
USH1C-207ENST00000527720 CC2D2BQ6DHV5 1058 aa17.08■□□□□ 0.33
USH1C-207ENST00000527720 SIAH1Q8IUQ4 282 aa17.08■□□□□ 0.33
USH1C-207ENST00000527720 HPS3Q969F9 1004 aa17.08■□□□□ 0.33
USH1C-207ENST00000527720 DNAJC19Q96DA6 116 aa17.08■□□□□ 0.33
USH1C-207ENST00000527720 AMNQ9BXJ7 453 aa17.08■□□□□ 0.33
USH1C-207ENST00000527720 REXO2Q9Y3B8 237 aaKnown RBP17.08■□□□□ 0.33
USH1C-207ENST00000527720 RASSF10A6NK89 507 aa17.08■□□□□ 0.32
USH1C-207ENST00000527720 ZRANB2O95218 330 aaKnown RBP eCLIP17.08■□□□□ 0.32
USH1C-207ENST00000527720 IDEP14735 1019 aa17.08■□□□□ 0.32
USH1C-207ENST00000527720 ABCB5Q2M3G0 1257 aa17.08■□□□□ 0.32
USH1C-207ENST00000527720 ZNF772Q68DY9 489 aaPredicted RBP17.08■□□□□ 0.32
USH1C-207ENST00000527720 CCDC84Q86UT8 332 aaPredicted RBP17.08■□□□□ 0.32
USH1C-207ENST00000527720 TEX2Q8IWB9 1127 aa17.08■□□□□ 0.32
USH1C-207ENST00000527720 SUPT20HQ8NEM7 779 aa17.08■□□□□ 0.32
USH1C-207ENST00000527720 PCDHAC2Q9Y5I4 1007 aa17.08■□□□□ 0.32
USH1C-207ENST00000527720 USP17L15C9J2P7 530 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 USP17L13C9JLJ4 530 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 USP17L11C9JVI0 530 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 USP17L18D6R9N7 530 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 USP17L22D6RA61 530 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 USP17L17D6RBQ6 530 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 USP17L19D6RCP7 530 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 USP17L20D6RJB6 530 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 TBX3O15119 743 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 CHMP4BP1P59074 171 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 USP17L24Q0WX57 530 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 ECM1Q16610 540 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 WHAMMP3Q1A5X7 153 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 TEX35Q5T0J7 233 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 USP17L6PQ6QN14 398 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 EHBP1Q8NDI1 1231 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 CRYGNQ8WXF5 182 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 AGPAT5Q9NUQ2 364 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 STK24Q9Y6E0 443 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 FAM196BA6NMK8 535 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 EIF3CLB5ME19 914 aaKnown RBP17.07■□□□□ 0.32
USH1C-207ENST00000527720 F5H6K3 240 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 POTEB2H3BUK9 544 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 MEIS2O14770 477 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 FOSP01100 380 aaPredicted RBP17.07■□□□□ 0.32
USH1C-207ENST00000527720 SLURP2P0DP57 97 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 ZSCAN20P17040 1043 aaPredicted RBP17.07■□□□□ 0.32
USH1C-207ENST00000527720 HNRNPH3P31942 346 aaKnown RBP17.07■□□□□ 0.32
USH1C-207ENST00000527720 MMP14P50281 582 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 KLRC3Q07444 240 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 COASYQ13057 564 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 MSL1Q68DK7 614 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 MYOCDQ8IZQ8 938 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 PCMTD1Q96MG8 357 aaPredicted RBP17.07■□□□□ 0.32
USH1C-207ENST00000527720 EIF3CQ99613 913 aaKnown RBP17.07■□□□□ 0.32
USH1C-207ENST00000527720 NDST4Q9H3R1 872 aa17.07■□□□□ 0.32
USH1C-207ENST00000527720 RAD21O60216 631 aa17.06■□□□□ 0.32
USH1C-207ENST00000527720 IPO7O95373 1038 aaKnown RBP17.06■□□□□ 0.32
USH1C-207ENST00000527720 GABPB1Q06547 395 aaPredicted RBP17.06■□□□□ 0.32
USH1C-207ENST00000527720 BTNL9Q6UXG8 535 aa17.06■□□□□ 0.32
USH1C-207ENST00000527720 C7orf43Q8WVR3 580 aa17.06■□□□□ 0.32
USH1C-207ENST00000527720 FHOD1Q9Y613 1164 aa17.06■□□□□ 0.32
USH1C-207ENST00000527720 PSMD14O00487 310 aa17.05■□□□□ 0.32
USH1C-207ENST00000527720 KIF20AO95235 890 aa17.05■□□□□ 0.32
USH1C-207ENST00000527720 Q4G0T1 1027 aa17.05■□□□□ 0.32
USH1C-207ENST00000527720 HAUS3Q68CZ6 603 aa17.05■□□□□ 0.32
USH1C-207ENST00000527720 LRRC55Q6ZSA7 311 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms