RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 CCL23P55773 120 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 SMAD3P84022 425 aaKnown RBP12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 EXOSC10Q01780 885 aaKnown RBP12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 SP2Q02086 613 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 PPIGQ13427 754 aaKnown RBP eCLIP12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 ADCK5Q3MIX3 580 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 ZNF365Q70YC5 407 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 FCHSD1Q86WN1 690 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 TMEM199Q8N511 208 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 SAMD3Q8N6K7 520 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 KAT2BQ92831 832 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 TCEANC2Q96MN5 208 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 SPZ1Q9BXG8 430 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 TTYH1Q9H313 450 aaPredicted RBP12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 BCAS3Q9H6U6 928 aa12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 MAP3K20Q9NYL2 800 aaKnown RBP12.09□□□□□ -0.47
PRPF40B-204ENST00000527253 hCG_1642624A0A1W2PR95 340 aa12.08□□□□□ -0.48
PRPF40B-204ENST00000527253 GRXCR1A8MXD5 290 aa12.08□□□□□ -0.48
PRPF40B-204ENST00000527253 SORBS3O60504 671 aa12.08□□□□□ -0.48
PRPF40B-204ENST00000527253 KPNA6O60684 536 aa12.08□□□□□ -0.48
PRPF40B-204ENST00000527253 CDC45O75419 566 aa12.08□□□□□ -0.48
PRPF40B-204ENST00000527253 SMARCA1P28370 1054 aa12.08□□□□□ -0.48
PRPF40B-204ENST00000527253 NFXL1Q6ZNB6 911 aa12.08□□□□□ -0.48
PRPF40B-204ENST00000527253 TMTC2Q8N394 836 aa12.08□□□□□ -0.48
PRPF40B-204ENST00000527253 CTCFLQ8NI51 663 aaPredicted RBP12.08□□□□□ -0.48
PRPF40B-204ENST00000527253 SCLYQ96I15 445 aa12.08□□□□□ -0.48
PRPF40B-204ENST00000527253 CTAGE1Q96RT6 745 aa12.08□□□□□ -0.48
PRPF40B-204ENST00000527253 SEMA6BQ9H3T3 888 aa12.08□□□□□ -0.48
PRPF40B-204ENST00000527253 IL23AQ9NPF7 189 aa12.08□□□□□ -0.48
PRPF40B-204ENST00000527253 CXXC1Q9P0U4 656 aaPredicted RBP12.08□□□□□ -0.48
PRPF40B-204ENST00000527253 STXBP5LQ9Y2K9 1186 aa12.08□□□□□ -0.48
PRPF40B-204ENST00000527253 LAMA2P24043 3122 aaKnown RBP12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 CCDC69A6NI79 296 aa12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 MEIS2O14770 477 aa12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 KIF5BP33176 963 aa12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 MRPS9P82933 396 aaKnown RBP12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 TSGA10IPQ3SY00 556 aa12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 BRDTQ58F21 947 aaPredicted RBP12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 FAM47CQ5HY64 1035 aa12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 NFRKBQ6P4R8 1299 aa12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 USP17L6PQ6QN14 398 aa12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 SGMS1Q86VZ5 419 aa12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 FANCBQ8NB91 859 aa12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 EMID1Q96A84 441 aaPredicted RBP12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 RRP36Q96EU6 259 aaKnown RBP12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 CCDC136Q96JN2 1154 aa12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 NEK1Q96PY6 1258 aa12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 LZTS2Q9BRK4 669 aa12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 BRPF3Q9ULD4 1205 aa12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 MRVI1Q9Y6F6 885 aa12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 FRMPD4Q14CM0 1322 aa12.07□□□□□ -0.48
PRPF40B-204ENST00000527253 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 UBA1P22314 1058 aaKnown RBP12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 GNAQP50148 359 aa12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 CHMP4BP1P59074 171 aa12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 TRAF1Q13077 416 aa12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 SEMA3FQ13275 785 aa12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 LAMC2Q13753 1193 aa12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 CELF3Q5SZQ8 465 aaKnown RBP12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 ZNF697Q5TEC3 545 aa12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 MYSM1Q5VVJ2 828 aa12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 TMTC3Q6ZXV5 915 aa12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 DHX37Q8IY37 1157 aaKnown RBP12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 CCDC82Q8N4S0 544 aa12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 HERVK_113Q902F9 699 aa12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 KCNB2Q92953 911 aa12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 CDX2Q99626 313 aaPredicted RBP12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 TELO2Q9Y4R8 837 aa12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 SLC12A7Q9Y666 1083 aa12.06□□□□□ -0.48
PRPF40B-204ENST00000527253 MYH7BA7E2Y1 1941 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 HAS3O00219 553 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 GGPS1O95749 300 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 FGBP02675 491 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 SUPT20HL2P0C7V6 817 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 CALM1P0DP23 149 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 CALM2P0DP24 149 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 CALM3P0DP25 149 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 HOXD8P13378 290 aaPredicted RBP12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 CPA1P15085 419 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 CASTP20810 708 aaKnown RBP12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 CCND2P30279 289 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 PBX2P40425 430 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 PTPN11Q06124 597 aaPredicted RBP12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 FUT2Q10981 343 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 HIC1Q14526 733 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 HSDL1Q3SXM5 330 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 RNF20Q5VTR2 975 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 GDF6Q6KF10 455 aaPredicted RBP12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 PSRC1Q6PGN9 363 aaPredicted RBP12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 DHX32Q7L7V1 743 aaKnown RBP12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 SESTD1Q86VW0 696 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 MICU3Q86XE3 530 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 PPTC7Q8NI37 304 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 FAM217BQ9NTX9 383 aaPredicted RBP12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 RTEL1Q9NZ71 1219 aa12.05□□□□□ -0.48
PRPF40B-204ENST00000527253 SCN5AQ14524 2016 aa12.04□□□□□ -0.48
PRPF40B-204ENST00000527253 COL6A3P12111 3177 aa12.04□□□□□ -0.48
PRPF40B-204ENST00000527253 SPATA31C2B4DYI2 1134 aa12.04□□□□□ -0.48
PRPF40B-204ENST00000527253 PIK3CDO00329 1044 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms