RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 EPHX3Q9H6B9 360 aa16.74■□□□□ 0.27
CPSF1-201ENST00000526271 JMJD4Q9H9V9 463 aa16.74■□□□□ 0.27
CPSF1-201ENST00000526271 CD320Q9NPF0 282 aa16.74■□□□□ 0.27
CPSF1-201ENST00000526271 DDX41Q9UJV9 622 aaKnown RBP16.74■□□□□ 0.27
CPSF1-201ENST00000526271 MYO7AQ13402 2215 aa16.74■□□□□ 0.27
CPSF1-201ENST00000526271 B4E1Z4 1266 aa16.73■□□□□ 0.27
CPSF1-201ENST00000526271 HAS3O00219 553 aa16.73■□□□□ 0.27
CPSF1-201ENST00000526271 KPNA6O60684 536 aa16.73■□□□□ 0.27
CPSF1-201ENST00000526271 KDM4AO75164 1064 aa16.73■□□□□ 0.27
CPSF1-201ENST00000526271 CXCL10P02778 98 aa16.73■□□□□ 0.27
CPSF1-201ENST00000526271 DGKHQ86XP1 1220 aa16.73■□□□□ 0.27
CPSF1-201ENST00000526271 PLEKHM2Q8IWE5 1019 aa16.73■□□□□ 0.27
CPSF1-201ENST00000526271 SMC5Q8IY18 1101 aa16.73■□□□□ 0.27
CPSF1-201ENST00000526271 STAG2Q8N3U4 1231 aa16.73■□□□□ 0.27
CPSF1-201ENST00000526271 PNMA1Q8ND90 353 aa16.73■□□□□ 0.27
CPSF1-201ENST00000526271 BCAS3Q9H6U6 928 aa16.73■□□□□ 0.27
CPSF1-201ENST00000526271 C11orf16Q9NQ32 467 aa16.73■□□□□ 0.27
CPSF1-201ENST00000526271 GPHNQ9NQX3 736 aaPredicted RBP16.73■□□□□ 0.27
CPSF1-201ENST00000526271 HDAC6Q9UBN7 1215 aa16.73■□□□□ 0.27
CPSF1-201ENST00000526271 CKBP12277 381 aa16.72■□□□□ 0.27
CPSF1-201ENST00000526271 HOXD8P13378 290 aaPredicted RBP16.72■□□□□ 0.27
CPSF1-201ENST00000526271 CHMP4BP1P59074 171 aa16.72■□□□□ 0.27
CPSF1-201ENST00000526271 GPATCH4Q5T3I0 446 aaKnown RBP16.72■□□□□ 0.27
CPSF1-201ENST00000526271 CHST3Q7LGC8 479 aa16.72■□□□□ 0.27
CPSF1-201ENST00000526271 IL31RAQ8NI17 732 aa16.72■□□□□ 0.27
CPSF1-201ENST00000526271 GPKOWQ92917 476 aaPredicted RBP eCLIP16.72■□□□□ 0.27
CPSF1-201ENST00000526271 FTOQ9C0B1 505 aaKnown RBP eCLIP16.72■□□□□ 0.27
CPSF1-201ENST00000526271 ZSWIM5Q9P217 1185 aa16.72■□□□□ 0.27
CPSF1-201ENST00000526271 GTF2IRD1Q9UHL9 959 aa16.72■□□□□ 0.27
CPSF1-201ENST00000526271 ABCB11O95342 1321 aa16.71■□□□□ 0.27
CPSF1-201ENST00000526271 GH1P01241 217 aa16.71■□□□□ 0.27
CPSF1-201ENST00000526271 IGHDP01880 384 aa16.71■□□□□ 0.27
CPSF1-201ENST00000526271 ZNF286BP0CG31 522 aa16.71■□□□□ 0.27
CPSF1-201ENST00000526271 PCP11498 1178 aaKnown RBP16.71■□□□□ 0.27
CPSF1-201ENST00000526271 SELPP16109 830 aa16.71■□□□□ 0.27
CPSF1-201ENST00000526271 EIF2AK2P19525 551 aaKnown RBP16.71■□□□□ 0.27
CPSF1-201ENST00000526271 SP2Q02086 613 aa16.71■□□□□ 0.27
CPSF1-201ENST00000526271 GHRHRQ02643 423 aa16.71■□□□□ 0.27
CPSF1-201ENST00000526271 BFSP2Q13515 415 aa16.71■□□□□ 0.27
CPSF1-201ENST00000526271 LRRC8DQ7L1W4 858 aa16.71■□□□□ 0.27
CPSF1-201ENST00000526271 RETREG2Q8NC44 543 aa16.71■□□□□ 0.27
CPSF1-201ENST00000526271 AFAP1L1Q8TED9 768 aa16.71■□□□□ 0.27
CPSF1-201ENST00000526271 GDPD5Q8WTR4 605 aa16.71■□□□□ 0.27
CPSF1-201ENST00000526271 EMID1Q96A84 441 aaPredicted RBP16.71■□□□□ 0.27
CPSF1-201ENST00000526271 MTMR8Q96EF0 704 aa16.71■□□□□ 0.27
CPSF1-201ENST00000526271 RMDN3Q96TC7 470 aa16.71■□□□□ 0.27
CPSF1-201ENST00000526271 TELO2Q9Y4R8 837 aa16.71■□□□□ 0.27
CPSF1-201ENST00000526271 BAIAP3O94812 1187 aa16.7■□□□□ 0.26
CPSF1-201ENST00000526271 F2P00734 622 aa16.7■□□□□ 0.26
CPSF1-201ENST00000526271 ACTN1P12814 892 aa16.7■□□□□ 0.26
CPSF1-201ENST00000526271 PSEN2P49810 448 aa16.7■□□□□ 0.26
CPSF1-201ENST00000526271 HSD17B4P51659 736 aa16.7■□□□□ 0.26
CPSF1-201ENST00000526271 TICAM2Q86XR7 235 aa16.7■□□□□ 0.26
CPSF1-201ENST00000526271 CAGE1Q8TC20 777 aa16.7■□□□□ 0.26
CPSF1-201ENST00000526271 NSUN6Q8TEA1 469 aaKnown RBP16.7■□□□□ 0.26
CPSF1-201ENST00000526271 ESR2Q92731 530 aa16.7■□□□□ 0.26
CPSF1-201ENST00000526271 RILPL2Q969X0 211 aa16.7■□□□□ 0.26
CPSF1-201ENST00000526271 ZFP91Q96JP5 570 aaPredicted RBP16.7■□□□□ 0.26
CPSF1-201ENST00000526271 SUGCTQ9HAC7 445 aa16.7■□□□□ 0.26
CPSF1-201ENST00000526271 SENP2Q9HC62 589 aa16.7■□□□□ 0.26
CPSF1-201ENST00000526271 PXMP2Q9NR77 195 aa16.7■□□□□ 0.26
CPSF1-201ENST00000526271 RAD50Q92878 1312 aa16.7■□□□□ 0.26
CPSF1-201ENST00000526271 TRIM6-TRIM34B2RNG4 842 aa16.69■□□□□ 0.26
CPSF1-201ENST00000526271 SORBS3O60504 671 aa16.69■□□□□ 0.26
CPSF1-201ENST00000526271 NR3C2P08235 984 aa16.69■□□□□ 0.26
CPSF1-201ENST00000526271 SEC23AQ15436 765 aa16.69■□□□□ 0.26
CPSF1-201ENST00000526271 SKIV2LQ15477 1246 aaKnown RBP16.69■□□□□ 0.26
CPSF1-201ENST00000526271 ZNF618Q5T7W0 954 aa16.69■□□□□ 0.26
CPSF1-201ENST00000526271 B4GALNT3Q6L9W6 998 aa16.69■□□□□ 0.26
CPSF1-201ENST00000526271 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.69■□□□□ 0.26
CPSF1-201ENST00000526271 CYB5R4Q7L1T6 521 aa16.69■□□□□ 0.26
CPSF1-201ENST00000526271 ZSCAN10Q96SZ4 725 aaPredicted RBP16.69■□□□□ 0.26
CPSF1-201ENST00000526271 ALG1Q9BT22 464 aa16.69■□□□□ 0.26
CPSF1-201ENST00000526271 OSBPL3Q9H4L5 887 aa16.69■□□□□ 0.26
CPSF1-201ENST00000526271 VAT1LQ9HCJ6 419 aa16.69■□□□□ 0.26
CPSF1-201ENST00000526271 PNMA2Q9UL42 364 aa16.69■□□□□ 0.26
CPSF1-201ENST00000526271 TAF6LQ9Y6J9 622 aa16.69■□□□□ 0.26
CPSF1-201ENST00000526271 C5orf42Q9H799 3197 aa16.68■□□□□ 0.26
CPSF1-201ENST00000526271 GJB5O95377 273 aa16.68■□□□□ 0.26
CPSF1-201ENST00000526271 MFSD10Q14728 455 aa16.68■□□□□ 0.26
CPSF1-201ENST00000526271 HSDL1Q3SXM5 330 aa16.68■□□□□ 0.26
CPSF1-201ENST00000526271 BRDTQ58F21 947 aaPredicted RBP16.68■□□□□ 0.26
CPSF1-201ENST00000526271 CNKSR3Q6P9H4 555 aa16.68■□□□□ 0.26
CPSF1-201ENST00000526271 CWC27Q6UX04 472 aaKnown RBP16.68■□□□□ 0.26
CPSF1-201ENST00000526271 IWS1Q96ST2 819 aa16.68■□□□□ 0.26
CPSF1-201ENST00000526271 PDCD2LQ9BRP1 358 aa16.68■□□□□ 0.26
CPSF1-201ENST00000526271 RNF41Q9H4P4 317 aaPredicted RBP16.68■□□□□ 0.26
CPSF1-201ENST00000526271 NLRC5Q86WI3 1866 aa16.67■□□□□ 0.26
CPSF1-201ENST00000526271 LINC01553A4QN01 128 aa16.67■□□□□ 0.26
CPSF1-201ENST00000526271 ZNF213O14771 459 aa16.67■□□□□ 0.26
CPSF1-201ENST00000526271 GTPBP6O43824 516 aaPredicted RBP16.67■□□□□ 0.26
CPSF1-201ENST00000526271 HOXC8P31273 242 aa16.67■□□□□ 0.26
CPSF1-201ENST00000526271 ERVK-21P61565 698 aa16.67■□□□□ 0.26
CPSF1-201ENST00000526271 STXBP2Q15833 593 aa16.67■□□□□ 0.26
CPSF1-201ENST00000526271 KIAA0753Q2KHM9 967 aa16.67■□□□□ 0.26
CPSF1-201ENST00000526271 ASPRV1Q53RT3 343 aa16.67■□□□□ 0.26
CPSF1-201ENST00000526271 MYSM1Q5VVJ2 828 aa16.67■□□□□ 0.26
CPSF1-201ENST00000526271 FBXO11Q86XK2 927 aa16.67■□□□□ 0.26
CPSF1-201ENST00000526271 C16orf70Q9BSU1 422 aa16.67■□□□□ 0.26
CPSF1-201ENST00000526271 LRFN3Q9BTN0 628 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms