RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 MECP2P51608 486 aaKnown RBP6.3□□□□□ -1.4
CD44-220ENST00000525688 DSG1Q02413 1049 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 BRDTQ58F21 947 aaPredicted RBP6.3□□□□□ -1.4
CD44-220ENST00000525688 FAM47CQ5HY64 1035 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 INTS5Q6P9B9 1019 aaKnown RBP6.3□□□□□ -1.4
CD44-220ENST00000525688 OVCH1Q7RTY7 1134 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 EXOC8Q8IYI6 725 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 WDR66Q8TBY9 1149 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 PANK1Q8TE04 598 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 DPF3Q92784 378 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 FBXW5Q969U6 566 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 TTC1Q99614 292 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 MYH16Q9H6N6 1097 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 IFT22Q9H7X7 185 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 IPPKQ9H8X2 491 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 COQ6Q9Y2Z9 468 aa6.3□□□□□ -1.4
CD44-220ENST00000525688 TOP2AP11388 1531 aaKnown RBP6.3□□□□□ -1.4
CD44-220ENST00000525688 A0A1W2PQ45 241 aaPredicted RBP6.29□□□□□ -1.4
CD44-220ENST00000525688 A0A1W2PQY0 241 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 M0R2C6 588 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 IGHA1P01876 353 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 PRNPP04156 253 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 S100BP04271 92 aaPredicted RBP6.29□□□□□ -1.4
CD44-220ENST00000525688 SRGAP2CP0DJJ0 459 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 GRIK1P39086 918 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 BCL6P41182 706 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 KIR2DL1P43626 348 aaPredicted RBP6.29□□□□□ -1.4
CD44-220ENST00000525688 KIR2DL2P43627 348 aaPredicted RBP6.29□□□□□ -1.4
CD44-220ENST00000525688 CORO7P57737 925 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 IRX6P78412 446 aaPredicted RBP6.29□□□□□ -1.4
CD44-220ENST00000525688 LACTBP83111 547 aaPredicted RBP6.29□□□□□ -1.4
CD44-220ENST00000525688 DUSP4Q13115 394 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 STAT4Q14765 748 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 TMEM177Q53S58 311 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 CHST14Q8NCH0 376 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 PI4K2BQ8TCG2 481 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 USP7Q93009 1102 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 SYTL4Q96C24 671 aaPredicted RBP6.29□□□□□ -1.4
CD44-220ENST00000525688 HHIPL1Q96JK4 782 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 CEP89Q96ST8 783 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.29□□□□□ -1.4
CD44-220ENST00000525688 CABP5Q9NP86 173 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 B4GALT6Q9UBX8 382 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 FBXL7Q9UJT9 491 aa6.29□□□□□ -1.4
CD44-220ENST00000525688 NESP48681 1621 aa6.28□□□□□ -1.4
CD44-220ENST00000525688 CCDC66A2RUB6 948 aa6.28□□□□□ -1.4
CD44-220ENST00000525688 ZGLP1P0C6A0 271 aa6.28□□□□□ -1.4
CD44-220ENST00000525688 GUCY2FP51841 1108 aa6.28□□□□□ -1.4
CD44-220ENST00000525688 IKZF1Q13422 519 aa6.28□□□□□ -1.4
CD44-220ENST00000525688 OTOP1Q7RTM1 612 aa6.28□□□□□ -1.4
CD44-220ENST00000525688 SLCO6A1Q86UG4 719 aa6.28□□□□□ -1.4
CD44-220ENST00000525688 NLRP10Q86W26 655 aa6.28□□□□□ -1.4
CD44-220ENST00000525688 SMC1BQ8NDV3 1235 aa6.28□□□□□ -1.4
CD44-220ENST00000525688 BCL7CQ8WUZ0 217 aaPredicted RBP6.28□□□□□ -1.4
CD44-220ENST00000525688 CARS2Q9HA77 564 aaKnown RBP6.28□□□□□ -1.4
CD44-220ENST00000525688 CLDND1Q9NY35 253 aa6.28□□□□□ -1.4
CD44-220ENST00000525688 PPARGC1AQ9UBK2 798 aaKnown RBP6.28□□□□□ -1.4
CD44-220ENST00000525688 EBF1Q9UH73 591 aa6.28□□□□□ -1.4
CD44-220ENST00000525688 APOBEC2Q9Y235 224 aaKnown RBP6.28□□□□□ -1.4
CD44-220ENST00000525688 X6R8D5 127 aa6.28□□□□□ -1.4
CD44-220ENST00000525688 LAMC3Q9Y6N6 1575 aa6.27□□□□□ -1.41
CD44-220ENST00000525688 WTIPA6NIX2 430 aaPredicted RBP6.27□□□□□ -1.41
CD44-220ENST00000525688 ZNF891A8MT65 544 aaPredicted RBP6.27□□□□□ -1.41
CD44-220ENST00000525688 NEMP1O14524 444 aa6.27□□□□□ -1.41
CD44-220ENST00000525688 TPD52L2O43399 206 aaKnown RBP6.27□□□□□ -1.41
CD44-220ENST00000525688 PPP1R11O60927 126 aaPredicted RBP6.27□□□□□ -1.41
CD44-220ENST00000525688 PYGMP11217 842 aa6.27□□□□□ -1.41
CD44-220ENST00000525688 BNIP3Q12983 259 aa6.27□□□□□ -1.41
CD44-220ENST00000525688 ARHGAP44Q17R89 818 aa6.27□□□□□ -1.41
CD44-220ENST00000525688 HABP4Q5JVS0 413 aaKnown RBP6.27□□□□□ -1.41
CD44-220ENST00000525688 PRSS36Q5K4E3 855 aa6.27□□□□□ -1.41
CD44-220ENST00000525688 ANGEL2Q5VTE6 544 aaKnown RBP6.27□□□□□ -1.41
CD44-220ENST00000525688 LHFPL2Q6ZUX7 228 aa6.27□□□□□ -1.41
CD44-220ENST00000525688 CEP68Q76N32 757 aa6.27□□□□□ -1.41
CD44-220ENST00000525688 SPATS2Q86XZ4 545 aaKnown RBP6.27□□□□□ -1.41
CD44-220ENST00000525688 WFDC3Q8IUB2 231 aa6.27□□□□□ -1.41
CD44-220ENST00000525688 NXPE1Q8N323 547 aa6.27□□□□□ -1.41
CD44-220ENST00000525688 ASIC4Q96FT7 647 aa6.27□□□□□ -1.41
CD44-220ENST00000525688 TMEM169Q96HH4 297 aa6.27□□□□□ -1.41
CD44-220ENST00000525688 PUS7LQ9H0K6 701 aaKnown RBP6.27□□□□□ -1.41
CD44-220ENST00000525688 SLC5A4Q9NY91 659 aa6.27□□□□□ -1.41
CD44-220ENST00000525688 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.27□□□□□ -1.41
CD44-220ENST00000525688 SLC5A6Q9Y289 635 aa6.27□□□□□ -1.41
CD44-220ENST00000525688 GAS7O60861 476 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 COBLO75128 1261 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 PARNO95453 639 aaKnown RBP6.26□□□□□ -1.41
CD44-220ENST00000525688 YBX3P16989 372 aaKnown RBP eCLIP6.26□□□□□ -1.41
CD44-220ENST00000525688 ADCYAP1R1P41586 468 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 LSSP48449 732 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 ST5P78524 1137 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 ZP2Q05996 745 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 SART3Q15020 963 aaKnown RBP6.26□□□□□ -1.41
CD44-220ENST00000525688 CRY1Q16526 586 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 SKOR2Q2VWA4 1001 aaPredicted RBP6.26□□□□□ -1.41
CD44-220ENST00000525688 RIOX2Q8IUF8 465 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 ANKS4BQ8N8V4 417 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 PLEKHO2Q8TD55 490 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 CHAMP1Q96JM3 812 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 ALPK1Q96QP1 1244 aa6.26□□□□□ -1.41
CD44-220ENST00000525688 JMJD8Q96S16 334 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms