RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 BCRP11274 1271 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 NR1D1P20393 614 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 ATP5DP30049 168 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 COL15A1P39059 1388 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 CYP2J2P51589 502 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 CLUL1Q15846 466 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 CCDC93Q567U6 631 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 TAOK1Q7L7X3 1001 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 TADA2BQ86TJ2 420 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 SLFN12Q8IYM2 578 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 PSD3Q9NYI0 1048 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 ASIC3Q9UHC3 531 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 NCK2O43639 380 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 NAA25Q14CX7 972 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 WHAMMQ8TF30 809 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 USP40Q9NVE5 1235 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 ZNF446Q9NWS9 450 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 PGRMC1O00264 195 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 FCER1AP12319 257 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 ZNF18P17022 549 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 PLCB3Q01970 1234 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 GFPT1Q06210 699 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 PPP2R5EQ16537 467 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 GLE1Q53GS7 698 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 ASPRV1Q53RT3 343 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 BEND6Q5SZJ8 279 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 ANKRD40Q6AI12 368 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 GJA10Q969M2 543 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 TMEM47Q9BQJ4 181 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 VIPAS39Q9H9C1 493 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 AGPAT5Q9NUQ2 364 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 BAIAP2L1Q9UHR4 511 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 FAM169AQ9Y6X4 670 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 C1orf167Q5SNV9 1468 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 ATP2A1O14983 1001 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 ORC4O43929 436 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 PALMO75781 387 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 KRT5P13647 590 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 TCP10Q12799 353 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 PABPC4Q13310 644 aaKnown RBP eCLIP9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 SETDB1Q15047 1291 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 RSRC2Q7L4I2 434 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 EMILIN3Q9NT22 766 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 TNS3Q68CZ2 1445 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 HGSO14964 777 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 AFPP02771 609 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 LACTBP83111 547 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 CYP4A11Q02928 519 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 FAM98CQ17RN3 349 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 STAG2Q8N3U4 1231 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 SPATA4Q8NEY3 305 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 UHMK1Q8TAS1 419 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 IFT74Q96LB3 600 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 PCDHA1Q9Y5I3 950 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 IKBKGQ9Y6K9 419 aa9.22□□□□□ -0.93
LIMCH1-216ENST00000512820 SRGNP10124 158 aa9.21□□□□□ -0.93
LIMCH1-216ENST00000512820 ERVK-24P63145 666 aa9.21□□□□□ -0.93
LIMCH1-216ENST00000512820 MUM1L1Q5H9M0 696 aa9.21□□□□□ -0.93
LIMCH1-216ENST00000512820 RIN2Q8WYP3 895 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-216ENST00000512820 KIFAP3Q92845 792 aa9.21□□□□□ -0.93
LIMCH1-216ENST00000512820 LEMD3Q9Y2U8 911 aa9.21□□□□□ -0.93
LIMCH1-216ENST00000512820 A0A1B0GUA9 196 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 hCG_1984214I3L0E3 225 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 PSMD14O00487 310 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 CFBP00751 764 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 HMGB2P26583 209 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 CDK8P49336 464 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 GRM4Q14833 912 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 ZNF713Q8N859 430 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 SLC44A5Q8NCS7 719 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 SH3RF3Q8TEJ3 882 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 FBF1Q8TES7 1133 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 PBKQ96KB5 322 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 BARHL2Q9NY43 387 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 PARP2Q9UGN5 583 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 ESYT3A0FGR9 886 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 POTEMA6NI47 508 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 BUB1BO60566 1050 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 DESP17661 470 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 KCNQ4P56696 695 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 CCDC6Q16204 474 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 UBE2SQ16763 222 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 LRRC1Q9BTT6 524 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 AP1M1Q9BXS5 423 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 SNX12Q9UMY4 172 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 KDM6AO15550 1401 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 PVALEFA0A1B0GWK0 134 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 PLA2G4BP0C869 781 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 GCFC2P16383 781 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 SLC16A2P36021 539 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 SEMA3FQ13275 785 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 SEPT2Q15019 361 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 E2F4Q16254 413 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 CCNI2Q6ZMN8 369 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 ZNF365Q70YC5 407 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 INTS8Q75QN2 995 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 MGARPQ8TDB4 240 aa9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 CELF1Q92879 486 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-216ENST00000512820 FAM84BQ96KN1 310 aaPredicted RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms