RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 PRAMEF19Q5SWL8 479 aa33.79■■■■□ 3
LIMCH1-211ENST00000509638 MAP3K21Q5TCX8 1036 aa33.79■■■■□ 3
LIMCH1-211ENST00000509638 MCTP1Q6DN14 999 aa33.79■■■■□ 3
LIMCH1-211ENST00000509638 ZFP91Q96JP5 570 aaPredicted RBP33.79■■■■□ 3
LIMCH1-211ENST00000509638 KATNBL1Q9H079 304 aa33.79■■■■□ 3
LIMCH1-211ENST00000509638 ABHD16BQ9H3Z7 469 aa33.79■■■■□ 3
LIMCH1-211ENST00000509638 ZHX1Q9UKY1 873 aaPredicted RBP33.79■■■■□ 3
LIMCH1-211ENST00000509638 FAM205CA6NFA0 338 aa33.78■■■■□ 3
LIMCH1-211ENST00000509638 KIF28PB7ZC32 967 aa33.78■■■■□ 3
LIMCH1-211ENST00000509638 CYBAP13498 195 aa33.78■■■■□ 3
LIMCH1-211ENST00000509638 MRPS9P82933 396 aaKnown RBP33.78■■■■□ 3
LIMCH1-211ENST00000509638 TBCKQ8TEA7 893 aa33.78■■■■□ 3
LIMCH1-211ENST00000509638 CRYGNQ8WXF5 182 aa33.78■■■■□ 3
LIMCH1-211ENST00000509638 VTA1Q9NP79 307 aa33.78■■■■□ 3
LIMCH1-211ENST00000509638 XRRA1Q6P2D8 792 aa33.77■■■■□ 3
LIMCH1-211ENST00000509638 ACVR2BQ13705 512 aa33.77■■■■□ 3
LIMCH1-211ENST00000509638 INF2Q27J81 1249 aa33.77■■■■□ 3
LIMCH1-211ENST00000509638 TRPV1Q8NER1 839 aa33.77■■■■□ 3
LIMCH1-211ENST00000509638 EIF3JO75822 258 aaKnown RBP33.76■■■□□ 2.99
LIMCH1-211ENST00000509638 NOSTRINQ8IVI9 506 aa33.76■■■□□ 2.99
LIMCH1-211ENST00000509638 NRBP1Q9UHY1 535 aa33.76■■■□□ 2.99
LIMCH1-211ENST00000509638 STX6O43752 255 aa33.75■■■□□ 2.99
LIMCH1-211ENST00000509638 U2AF2P26368 475 aaKnown RBP eCLIP33.75■■■□□ 2.99
LIMCH1-211ENST00000509638 FRMPD3Q5JV73 1810 aa33.74■■■□□ 2.99
LIMCH1-211ENST00000509638 STAM2O75886 525 aa33.74■■■□□ 2.99
LIMCH1-211ENST00000509638 ZNF865P0CJ78 1059 aaPredicted RBP33.74■■■□□ 2.99
LIMCH1-211ENST00000509638 RTEL1Q9NZ71 1219 aa33.74■■■□□ 2.99
LIMCH1-211ENST00000509638 DAXXQ9UER7 740 aaPredicted RBP33.74■■■□□ 2.99
LIMCH1-211ENST00000509638 CCND3P30281 292 aaPredicted RBP33.73■■■□□ 2.99
LIMCH1-211ENST00000509638 COL13A1Q5TAT6 717 aaPredicted RBP33.73■■■□□ 2.99
LIMCH1-211ENST00000509638 ARMC5Q96C12 935 aa33.73■■■□□ 2.99
LIMCH1-211ENST00000509638 MTMR6Q9Y217 621 aa33.73■■■□□ 2.99
LIMCH1-211ENST00000509638 RGS20O76081 388 aa33.72■■■□□ 2.99
LIMCH1-211ENST00000509638 MYCP01106 439 aaPredicted RBP33.72■■■□□ 2.99
LIMCH1-211ENST00000509638 CYP3A4P08684 503 aa33.72■■■□□ 2.99
LIMCH1-211ENST00000509638 SEPT14Q6ZU15 432 aa33.72■■■□□ 2.99
LIMCH1-211ENST00000509638 ZNF333Q96JL9 665 aa33.72■■■□□ 2.99
LIMCH1-211ENST00000509638 INPP4AQ96PE3 977 aaPredicted RBP33.72■■■□□ 2.99
LIMCH1-211ENST00000509638 PDGFCQ9NRA1 345 aa33.72■■■□□ 2.99
LIMCH1-211ENST00000509638 ITGB5P18084 799 aa33.72■■■□□ 2.99
LIMCH1-211ENST00000509638 TAPT1Q6NXT6 567 aa33.72■■■□□ 2.99
LIMCH1-211ENST00000509638 NEK8Q86SG6 692 aa33.72■■■□□ 2.99
LIMCH1-211ENST00000509638 CNGA1P29973 690 aa33.71■■■□□ 2.99
LIMCH1-211ENST00000509638 ZNF76P36508 570 aa33.71■■■□□ 2.99
LIMCH1-211ENST00000509638 CCDC144BQ3MJ40 725 aa33.71■■■□□ 2.99
LIMCH1-211ENST00000509638 GNPTABQ3T906 1256 aa33.71■■■□□ 2.99
LIMCH1-211ENST00000509638 FERMT3Q86UX7 667 aa33.71■■■□□ 2.99
LIMCH1-211ENST00000509638 UBIAD1Q9Y5Z9 338 aa33.71■■■□□ 2.99
LIMCH1-211ENST00000509638 EDIL3O43854 480 aa33.7■■■□□ 2.99
LIMCH1-211ENST00000509638 LETM2Q2VYF4 491 aa33.7■■■□□ 2.99
LIMCH1-211ENST00000509638 CEP55Q53EZ4 464 aa33.7■■■□□ 2.99
LIMCH1-211ENST00000509638 SCFD2Q8WU76 684 aa33.7■■■□□ 2.99
LIMCH1-211ENST00000509638 HMX1Q9NP08 348 aaPredicted RBP33.7■■■□□ 2.99
LIMCH1-211ENST00000509638 DOCK5Q9H7D0 1870 aa33.69■■■□□ 2.98
LIMCH1-211ENST00000509638 MYH15Q9Y2K3 1946 aa33.69■■■□□ 2.98
LIMCH1-211ENST00000509638 FAM86B1E9PN63 330 aa33.69■■■□□ 2.98
LIMCH1-211ENST00000509638 FAM86B2P0C5J1 330 aa33.69■■■□□ 2.98
LIMCH1-211ENST00000509638 ADCYAP1R1P41586 468 aa33.69■■■□□ 2.98
LIMCH1-211ENST00000509638 USP11P51784 963 aa33.69■■■□□ 2.98
LIMCH1-211ENST00000509638 MTFR1Q15390 333 aa33.69■■■□□ 2.98
LIMCH1-211ENST00000509638 CYP2W1Q8TAV3 490 aa33.69■■■□□ 2.98
LIMCH1-211ENST00000509638 MXRA8Q9BRK3 442 aa33.69■■■□□ 2.98
LIMCH1-211ENST00000509638 UNC93B1Q9H1C4 597 aa33.69■■■□□ 2.98
LIMCH1-211ENST00000509638 PKP1Q13835 747 aa33.68■■■□□ 2.98
LIMCH1-211ENST00000509638 WDR11Q9BZH6 1224 aa33.68■■■□□ 2.98
LIMCH1-211ENST00000509638 MRVI1Q9Y6F6 885 aa33.68■■■□□ 2.98
LIMCH1-211ENST00000509638 SEPT4O43236 478 aa33.68■■■□□ 2.98
LIMCH1-211ENST00000509638 TDP2O95551 362 aa33.68■■■□□ 2.98
LIMCH1-211ENST00000509638 AKR1A1P14550 325 aa33.68■■■□□ 2.98
LIMCH1-211ENST00000509638 CIITAP33076 1130 aa33.68■■■□□ 2.98
LIMCH1-211ENST00000509638 MTMR1Q13613 665 aa33.68■■■□□ 2.98
LIMCH1-211ENST00000509638 XRN2Q9H0D6 950 aaKnown RBP eCLIP33.68■■■□□ 2.98
LIMCH1-211ENST00000509638 C11orf97A0A1B0GVM6 126 aaPredicted RBP33.67■■■□□ 2.98
LIMCH1-211ENST00000509638 RBM47A0AV96 593 aaKnown RBP33.67■■■□□ 2.98
LIMCH1-211ENST00000509638 ADCY6O43306 1168 aa33.67■■■□□ 2.98
LIMCH1-211ENST00000509638 ARIH2O95376 493 aa33.67■■■□□ 2.98
LIMCH1-211ENST00000509638 CCL5P13501 91 aa33.67■■■□□ 2.98
LIMCH1-211ENST00000509638 NLRX1Q86UT6 975 aa33.67■■■□□ 2.98
LIMCH1-211ENST00000509638 LENG1Q96BZ8 264 aaPredicted RBP33.67■■■□□ 2.98
LIMCH1-211ENST00000509638 GPRASP2Q96D09 838 aa33.67■■■□□ 2.98
LIMCH1-211ENST00000509638 JADE2Q9NQC1 790 aa33.67■■■□□ 2.98
LIMCH1-211ENST00000509638 FAM184BQ9ULE4 1060 aa33.67■■■□□ 2.98
LIMCH1-211ENST00000509638 IGLV3-22A0A075B6J6 115 aa33.66■■■□□ 2.98
LIMCH1-211ENST00000509638 FIBPO43427 364 aa33.66■■■□□ 2.98
LIMCH1-211ENST00000509638 PDIA4P13667 645 aaKnown RBP33.66■■■□□ 2.98
LIMCH1-211ENST00000509638 SEMA3FQ13275 785 aa33.66■■■□□ 2.98
LIMCH1-211ENST00000509638 TTLL4Q14679 1199 aa33.66■■■□□ 2.98
LIMCH1-211ENST00000509638 RESTQ13127 1097 aa33.65■■■□□ 2.98
LIMCH1-211ENST00000509638 PRR16Q569H4 304 aa33.65■■■□□ 2.98
LIMCH1-211ENST00000509638 BRAPQ7Z569 592 aa33.65■■■□□ 2.98
LIMCH1-211ENST00000509638 NOL7Q9UMY1 257 aaKnown RBP33.65■■■□□ 2.98
LIMCH1-211ENST00000509638 MEIS1O00470 390 aa33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 WNT7AO00755 349 aa33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 CCNT1O60563 726 aaKnown RBP33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 SETQ01105 290 aaPredicted RBP33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 TMEM63BQ5T3F8 832 aa33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 ANO1Q5XXA6 986 aa33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 MOXD1Q6UVY6 613 aa33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 NIPA1Q7RTP0 329 aa33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 LENG9Q96B70 501 aa33.64■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms