RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 TRPV1Q8NER1 839 aa10.46□□□□□ -0.73
NUP54-207ENST00000508583 TBC1D5Q92609 795 aa10.46□□□□□ -0.73
NUP54-207ENST00000508583 AP5M1Q9H0R1 490 aa10.46□□□□□ -0.73
NUP54-207ENST00000508583 XPNPEP3Q9NQH7 507 aa10.46□□□□□ -0.73
NUP54-207ENST00000508583 COL20A1Q9P218 1284 aa10.46□□□□□ -0.73
NUP54-207ENST00000508583 OGDHLQ9ULD0 1010 aa10.46□□□□□ -0.73
NUP54-207ENST00000508583 ASTN1O14525 1302 aa10.46□□□□□ -0.73
NUP54-207ENST00000508583 DNM1LO00429 736 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 MAFGO15525 162 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 FARP2O94887 1054 aaPredicted RBP10.45□□□□□ -0.74
NUP54-207ENST00000508583 MYCLP12524 364 aaPredicted RBP10.45□□□□□ -0.74
NUP54-207ENST00000508583 DUSP28Q4G0W2 176 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 EEPD1Q7L9B9 569 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 TLK2Q86UE8 772 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 NLRX1Q86UT6 975 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 VSIG10LQ86VR7 867 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 CCDC83Q8IWF9 413 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 PCSK9Q8NBP7 692 aaKnown RBP10.45□□□□□ -0.74
NUP54-207ENST00000508583 DAGLBQ8NCG7 672 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 NSUN7Q8NE18 718 aaKnown RBP10.45□□□□□ -0.74
NUP54-207ENST00000508583 PURBQ96QR8 312 aaKnown RBP10.45□□□□□ -0.74
NUP54-207ENST00000508583 ALG1Q9BT22 464 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 WDR11Q9BZH6 1224 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 KATNBL1Q9H079 304 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 VPS54Q9P1Q0 977 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 PCDHA6Q9UN73 950 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 PCDHA4Q9UN74 947 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.45□□□□□ -0.74
NUP54-207ENST00000508583 PCDHA8Q9Y5H6 950 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 MRVI1Q9Y6F6 885 aa10.45□□□□□ -0.74
NUP54-207ENST00000508583 RBM47A0AV96 593 aaKnown RBP10.44□□□□□ -0.74
NUP54-207ENST00000508583 FIBPO43427 364 aa10.44□□□□□ -0.74
NUP54-207ENST00000508583 GABBR2O75899 941 aa10.44□□□□□ -0.74
NUP54-207ENST00000508583 LARGE1O95461 756 aa10.44□□□□□ -0.74
NUP54-207ENST00000508583 TXNP10599 105 aaKnown RBP10.44□□□□□ -0.74
NUP54-207ENST00000508583 EN2P19622 333 aaPredicted RBP10.44□□□□□ -0.74
NUP54-207ENST00000508583 CST5P28325 142 aaPredicted RBP10.44□□□□□ -0.74
NUP54-207ENST00000508583 CLK2P49760 499 aaKnown RBP10.44□□□□□ -0.74
NUP54-207ENST00000508583 CPT1AP50416 773 aa10.44□□□□□ -0.74
NUP54-207ENST00000508583 SAFBQ15424 915 aaKnown RBP eCLIP10.44□□□□□ -0.74
NUP54-207ENST00000508583 UBE2SQ16763 222 aa10.44□□□□□ -0.74
NUP54-207ENST00000508583 TYW1BQ6NUM6 668 aa10.44□□□□□ -0.74
NUP54-207ENST00000508583 TAPT1Q6NXT6 567 aa10.44□□□□□ -0.74
NUP54-207ENST00000508583 SEPT14Q6ZU15 432 aa10.44□□□□□ -0.74
NUP54-207ENST00000508583 NECAB2Q7Z6G3 386 aa10.44□□□□□ -0.74
NUP54-207ENST00000508583 GIMAP8Q8ND71 665 aaPredicted RBP10.44□□□□□ -0.74
NUP54-207ENST00000508583 TMX3Q96JJ7 454 aa10.44□□□□□ -0.74
NUP54-207ENST00000508583 TSEN34Q9BSV6 310 aaKnown RBP10.44□□□□□ -0.74
NUP54-207ENST00000508583 HTATIP2Q9BUP3 242 aa10.44□□□□□ -0.74
NUP54-207ENST00000508583 ANO3Q9BYT9 981 aa10.44□□□□□ -0.74
NUP54-207ENST00000508583 KIAA1217Q5T5P2 1943 aa10.44□□□□□ -0.74
NUP54-207ENST00000508583 TNRC18O15417 2968 aaPredicted RBP10.44□□□□□ -0.74
NUP54-207ENST00000508583 SYNRGQ9UMZ2 1314 aa10.43□□□□□ -0.74
NUP54-207ENST00000508583 MOXD2PA6NHM9 499 aa10.43□□□□□ -0.74
NUP54-207ENST00000508583 KPNA6O60684 536 aa10.43□□□□□ -0.74
NUP54-207ENST00000508583 PPFIA3O75145 1194 aa10.43□□□□□ -0.74
NUP54-207ENST00000508583 CTDNEP1O95476 244 aa10.43□□□□□ -0.74
NUP54-207ENST00000508583 C6orf222P0C671 652 aaPredicted RBP10.43□□□□□ -0.74
NUP54-207ENST00000508583 ZNF76P36508 570 aa10.43□□□□□ -0.74
NUP54-207ENST00000508583 SREBF1P36956 1147 aa10.43□□□□□ -0.74
NUP54-207ENST00000508583 ADCYAP1R1P41586 468 aa10.43□□□□□ -0.74
NUP54-207ENST00000508583 SETQ01105 290 aaPredicted RBP10.43□□□□□ -0.74
NUP54-207ENST00000508583 NEDD9Q14511 834 aa10.43□□□□□ -0.74
NUP54-207ENST00000508583 KRT25Q7Z3Z0 450 aa10.43□□□□□ -0.74
NUP54-207ENST00000508583 BLIDQ8IZY5 108 aa10.43□□□□□ -0.74
NUP54-207ENST00000508583 GPRASP2Q96D09 838 aa10.43□□□□□ -0.74
NUP54-207ENST00000508583 SHISA4Q96DD7 197 aa10.43□□□□□ -0.74
NUP54-207ENST00000508583 INPP4AQ96PE3 977 aaPredicted RBP10.43□□□□□ -0.74
NUP54-207ENST00000508583 NAP1L4Q99733 375 aaKnown RBP10.43□□□□□ -0.74
NUP54-207ENST00000508583 UPF3AQ9H1J1 476 aaKnown RBP10.43□□□□□ -0.74
NUP54-207ENST00000508583 GNEQ9Y223 722 aaKnown RBP10.43□□□□□ -0.74
NUP54-207ENST00000508583 DDX49Q9Y6V7 483 aaKnown RBP10.43□□□□□ -0.74
NUP54-207ENST00000508583 CCDC194A0A1B0GVG4 234 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 C19orf67A6NJJ6 358 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 CABYRO75952 493 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 GH1P01241 217 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 MYCNP04198 464 aaPredicted RBP10.42□□□□□ -0.74
NUP54-207ENST00000508583 SMPD1P17405 629 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 ICAM3P32942 547 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 KRT2P35908 639 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 RGS19P49795 217 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 GJA9P57773 515 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 NKX3-2P78367 333 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 MTMR1Q13613 665 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 LAMC2Q13753 1193 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 LRRC41Q15345 812 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 FSCN1Q16658 493 aaKnown RBP10.42□□□□□ -0.74
NUP54-207ENST00000508583 JAKMIP3Q5VZ66 844 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 NIPA1Q7RTP0 329 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 HSCBQ8IWL3 235 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 OR6J1Q8NGC5 347 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 EMID1Q96A84 441 aaPredicted RBP10.42□□□□□ -0.74
NUP54-207ENST00000508583 C8orf76Q96K31 380 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 SENP7Q9BQF6 1050 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 PHF20Q9BVI0 1012 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 SEZ6LQ9BYH1 1024 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 C11orf49Q9H6J7 331 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 PDGFCQ9NRA1 345 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 TCEAL9Q9UHQ7 104 aa10.42□□□□□ -0.74
NUP54-207ENST00000508583 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms