RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 FAM47CQ5HY64 1035 aa15.12■□□□□ 0.01
HMGCS1-205ENST00000508319 ARHGEF16Q5VV41 709 aa15.12■□□□□ 0.01
HMGCS1-205ENST00000508319 OTOP2Q7RTS6 562 aa15.12■□□□□ 0.01
HMGCS1-205ENST00000508319 HOMER1Q86YM7 354 aa15.12■□□□□ 0.01
HMGCS1-205ENST00000508319 NCOA7Q8NI08 942 aa15.12■□□□□ 0.01
HMGCS1-205ENST00000508319 AFG1LQ8WV93 481 aa15.12■□□□□ 0.01
HMGCS1-205ENST00000508319 MAP4K1Q92918 833 aa15.12■□□□□ 0.01
HMGCS1-205ENST00000508319 RIOX1Q9H6W3 641 aa15.12■□□□□ 0.01
HMGCS1-205ENST00000508319 PCDHA1Q9Y5I3 950 aa15.12■□□□□ 0.01
HMGCS1-205ENST00000508319 MYH7BA7E2Y1 1941 aa15.11■□□□□ 0.01
HMGCS1-205ENST00000508319 TTC28Q96AY4 2481 aa15.11■□□□□ 0.01
HMGCS1-205ENST00000508319 FGBP02675 491 aa15.11■□□□□ 0.01
HMGCS1-205ENST00000508319 NR3C2P08235 984 aa15.11■□□□□ 0.01
HMGCS1-205ENST00000508319 PTPN11Q06124 597 aaPredicted RBP15.11■□□□□ 0.01
HMGCS1-205ENST00000508319 WTAPQ15007 396 aa15.11■□□□□ 0.01
HMGCS1-205ENST00000508319 SART3Q15020 963 aaKnown RBP15.11■□□□□ 0.01
HMGCS1-205ENST00000508319 CHST3Q7LGC8 479 aa15.11■□□□□ 0.01
HMGCS1-205ENST00000508319 EMID1Q96A84 441 aaPredicted RBP15.11■□□□□ 0.01
HMGCS1-205ENST00000508319 PIGSQ96S52 555 aa15.11■□□□□ 0.01
HMGCS1-205ENST00000508319 PDCD2LQ9BRP1 358 aa15.11■□□□□ 0.01
HMGCS1-205ENST00000508319 MTIF3Q9H2K0 278 aaKnown RBP15.11■□□□□ 0.01
HMGCS1-205ENST00000508319 DDX41Q9UJV9 622 aaKnown RBP15.11■□□□□ 0.01
HMGCS1-205ENST00000508319 RBM8AQ9Y5S9 174 aaKnown RBP15.11■□□□□ 0.01
HMGCS1-205ENST00000508319 TET1Q8NFU7 2136 aa15.11■□□□□ 0.01
HMGCS1-205ENST00000508319 TRANK1O15050 2925 aa15.1■□□□□ 0.01
HMGCS1-205ENST00000508319 ERICH2A1L162 156 aa15.1■□□□□ 0.01
HMGCS1-205ENST00000508319 PITPNM1O00562 1244 aa15.1■□□□□ 0.01
HMGCS1-205ENST00000508319 EIF3JO75822 258 aaKnown RBP15.1■□□□□ 0.01
HMGCS1-205ENST00000508319 RGS20O76081 388 aa15.1■□□□□ 0.01
HMGCS1-205ENST00000508319 HOXA13P31271 388 aaPredicted RBP15.1■□□□□ 0.01
HMGCS1-205ENST00000508319 IL31RAQ8NI17 732 aa15.1■□□□□ 0.01
HMGCS1-205ENST00000508319 KAT2BQ92831 832 aa15.1■□□□□ 0.01
HMGCS1-205ENST00000508319 CTAGE1Q96RT6 745 aa15.1■□□□□ 0.01
HMGCS1-205ENST00000508319 RTN4Q9NQC3 1192 aaKnown RBP15.1■□□□□ 0.01
HMGCS1-205ENST00000508319 MAP3K20Q9NYL2 800 aaKnown RBP15.1■□□□□ 0.01
HMGCS1-205ENST00000508319 MRVI1Q9Y6F6 885 aa15.1■□□□□ 0.01
HMGCS1-205ENST00000508319 TRIP12Q14669 1992 aaPredicted RBP15.1■□□□□ 0.01
HMGCS1-205ENST00000508319 PFKMP08237 780 aa15.09■□□□□ 0.01
HMGCS1-205ENST00000508319 TMEM67Q5HYA8 995 aa15.09■□□□□ 0.01
HMGCS1-205ENST00000508319 SESTD1Q86VW0 696 aa15.09■□□□□ 0.01
HMGCS1-205ENST00000508319 RPUSD2Q8IZ73 545 aaKnown RBP15.09■□□□□ 0.01
HMGCS1-205ENST00000508319 SAMD3Q8N6K7 520 aa15.09■□□□□ 0.01
HMGCS1-205ENST00000508319 IGDCC4Q8TDY8 1250 aa15.09■□□□□ 0.01
HMGCS1-205ENST00000508319 YBX2Q9Y2T7 364 aaKnown RBP15.09■□□□□ 0.01
HMGCS1-205ENST00000508319 PNMA6FA0A0J9YX94 578 aa15.08■□□□□ 0
HMGCS1-205ENST00000508319 CHMP4BP1P59074 171 aa15.08■□□□□ 0
HMGCS1-205ENST00000508319 COL9A3Q14050 684 aaPredicted RBP15.08■□□□□ 0
HMGCS1-205ENST00000508319 PGM5Q15124 567 aa15.08■□□□□ 0
HMGCS1-205ENST00000508319 RAB30Q15771 203 aa15.08■□□□□ 0
HMGCS1-205ENST00000508319 DEFB128Q7Z7B8 93 aa15.08■□□□□ 0
HMGCS1-205ENST00000508319 CATIPQ7Z7H3 387 aa15.08■□□□□ 0
HMGCS1-205ENST00000508319 VSIG10LQ86VR7 867 aa15.08■□□□□ 0
HMGCS1-205ENST00000508319 PPTC7Q8NI37 304 aa15.08■□□□□ 0
HMGCS1-205ENST00000508319 LSG1Q9H089 658 aaKnown RBP15.08■□□□□ 0
HMGCS1-205ENST00000508319 LY9Q9HBG7 655 aa15.08■□□□□ 0
HMGCS1-205ENST00000508319 MSRAQ9UJ68 235 aa15.08■□□□□ 0
HMGCS1-205ENST00000508319 SLC4A7Q9Y6M7 1214 aa15.08■□□□□ 0
HMGCS1-205ENST00000508319 FRMPD4Q14CM0 1322 aa15.08■□□□□ 0
HMGCS1-205ENST00000508319 PTPRSQ13332 1948 aa15.07■□□□□ 0
HMGCS1-205ENST00000508319 MUC3AQ02505 3323 aa15.07■□□□□ 0
HMGCS1-205ENST00000508319 GCOM1H8Y6P7 765 aaPredicted RBP15.07■□□□□ 0
HMGCS1-205ENST00000508319 F2P00734 622 aa15.07■□□□□ 0
HMGCS1-205ENST00000508319 IQCF3P0C7M6 154 aa15.07■□□□□ 0
HMGCS1-205ENST00000508319 POLR2MP0CAP2 368 aa15.07■□□□□ 0
HMGCS1-205ENST00000508319 ZNF286BP0CG31 522 aa15.07■□□□□ 0
HMGCS1-205ENST00000508319 MYCLP12524 364 aaPredicted RBP15.07■□□□□ 0
HMGCS1-205ENST00000508319 HOXD8P13378 290 aaPredicted RBP15.07■□□□□ 0
HMGCS1-205ENST00000508319 CASTP20810 708 aaKnown RBP15.07■□□□□ 0
HMGCS1-205ENST00000508319 RFC2P35250 354 aa15.07■□□□□ 0
HMGCS1-205ENST00000508319 PTGISQ16647 500 aa15.07■□□□□ 0
HMGCS1-205ENST00000508319 DGKDQ16760 1214 aa15.07■□□□□ 0
HMGCS1-205ENST00000508319 GDF6Q6KF10 455 aaPredicted RBP15.07■□□□□ 0
HMGCS1-205ENST00000508319 ZNF654Q8IZM8 581 aa15.07■□□□□ 0
HMGCS1-205ENST00000508319 USP38Q8NB14 1042 aa15.07■□□□□ 0
HMGCS1-205ENST00000508319 MAP3K14Q99558 947 aa15.07■□□□□ 0
HMGCS1-205ENST00000508319 MYL10Q9BUA6 226 aa15.07■□□□□ 0
HMGCS1-205ENST00000508319 COL25A1Q9BXS0 654 aaPredicted RBP15.07■□□□□ 0
HMGCS1-205ENST00000508319 NKX2-4Q9H2Z4 354 aa15.07■□□□□ 0
HMGCS1-205ENST00000508319 NOD1Q9Y239 953 aa15.07■□□□□ 0
HMGCS1-205ENST00000508319 REV3LO60673 3130 aa15.07■□□□□ 0
HMGCS1-205ENST00000508319 DOCK5Q9H7D0 1870 aa15.06■□□□□ 0
HMGCS1-205ENST00000508319 ZBBXA8MT70 800 aa15.06■□□□□ 0
HMGCS1-205ENST00000508319 DDAH1O94760 285 aa15.06■□□□□ 0
HMGCS1-205ENST00000508319 UBA1P22314 1058 aaKnown RBP15.06■□□□□ 0
HMGCS1-205ENST00000508319 RABGGTBP53611 331 aa15.06■□□□□ 0
HMGCS1-205ENST00000508319 TRAF1Q13077 416 aa15.06■□□□□ 0
HMGCS1-205ENST00000508319 BFSP2Q13515 415 aa15.06■□□□□ 0
HMGCS1-205ENST00000508319 LAMC2Q13753 1193 aa15.06■□□□□ 0
HMGCS1-205ENST00000508319 MYSM1Q5VVJ2 828 aa15.06■□□□□ 0
HMGCS1-205ENST00000508319 FCHSD1Q86WN1 690 aa15.06■□□□□ 0
HMGCS1-205ENST00000508319 DHX38Q92620 1227 aaKnown RBP15.06■□□□□ 0
HMGCS1-205ENST00000508319 GPKOWQ92917 476 aaPredicted RBP eCLIP15.06■□□□□ 0
HMGCS1-205ENST00000508319 ESYT1Q9BSJ8 1104 aa15.06■□□□□ 0
HMGCS1-205ENST00000508319 MTA3Q9BTC8 594 aa15.06■□□□□ 0
HMGCS1-205ENST00000508319 SPZ1Q9BXG8 430 aa15.06■□□□□ 0
HMGCS1-205ENST00000508319 PRDM12Q9H4Q4 367 aa15.06■□□□□ 0
HMGCS1-205ENST00000508319 GTF2IRD1Q9UHL9 959 aa15.06■□□□□ 0
HMGCS1-205ENST00000508319 HAS3O00219 553 aa15.05■□□□□ -0
HMGCS1-205ENST00000508319 SH2B2O14492 632 aaPredicted RBP15.05■□□□□ -0
HMGCS1-205ENST00000508319 PRC1O43663 620 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms