RNA–Protein interactions for RNA: ENST00000496445.5

VTI1A-209, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 853 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-209ENST00000496445 NR3C2P08235 984 aa16.56■□□□□ 0.24
VTI1A-209ENST00000496445 CCL23P55773 120 aa16.56■□□□□ 0.24
VTI1A-209ENST00000496445 BRDTQ58F21 947 aaPredicted RBP16.56■□□□□ 0.24
VTI1A-209ENST00000496445 CREB3L3Q68CJ9 461 aa16.56■□□□□ 0.24
VTI1A-209ENST00000496445 ZNF365Q70YC5 407 aa16.56■□□□□ 0.24
VTI1A-209ENST00000496445 AFG1LQ8WV93 481 aa16.56■□□□□ 0.24
VTI1A-209ENST00000496445 PDCD2LQ9BRP1 358 aa16.56■□□□□ 0.24
VTI1A-209ENST00000496445 SEMA6BQ9H3T3 888 aa16.56■□□□□ 0.24
VTI1A-209ENST00000496445 MAP3K20Q9NYL2 800 aaKnown RBP16.56■□□□□ 0.24
VTI1A-209ENST00000496445 DDX41Q9UJV9 622 aaKnown RBP16.56■□□□□ 0.24
VTI1A-209ENST00000496445 PNMA6FA0A0J9YX94 578 aa16.55■□□□□ 0.24
VTI1A-209ENST00000496445 EIF3JO75822 258 aaKnown RBP16.55■□□□□ 0.24
VTI1A-209ENST00000496445 DDAH1O94760 285 aa16.55■□□□□ 0.24
VTI1A-209ENST00000496445 GH1P01241 217 aa16.55■□□□□ 0.24
VTI1A-209ENST00000496445 CYP2C9P11712 490 aa16.55■□□□□ 0.24
VTI1A-209ENST00000496445 PGM5Q15124 567 aa16.55■□□□□ 0.24
VTI1A-209ENST00000496445 NECTIN1Q15223 517 aa16.55■□□□□ 0.24
VTI1A-209ENST00000496445 CASC1Q6TDU7 716 aa16.55■□□□□ 0.24
VTI1A-209ENST00000496445 MAP3K14Q99558 947 aa16.55■□□□□ 0.24
VTI1A-209ENST00000496445 CDX2Q99626 313 aaPredicted RBP16.55■□□□□ 0.24
VTI1A-209ENST00000496445 MTA3Q9BTC8 594 aa16.55■□□□□ 0.24
VTI1A-209ENST00000496445 ANO2Q9NQ90 1003 aa16.55■□□□□ 0.24
VTI1A-209ENST00000496445 FRMPD4Q14CM0 1322 aa16.54■□□□□ 0.24
VTI1A-209ENST00000496445 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.54■□□□□ 0.24
VTI1A-209ENST00000496445 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.54■□□□□ 0.24
VTI1A-209ENST00000496445 KPNA6O60684 536 aa16.54■□□□□ 0.24
VTI1A-209ENST00000496445 DNAJB2P25686 324 aa16.54■□□□□ 0.24
VTI1A-209ENST00000496445 MCM5P33992 734 aa16.54■□□□□ 0.24
VTI1A-209ENST00000496445 NFRKBQ6P4R8 1299 aa16.54■□□□□ 0.24
VTI1A-209ENST00000496445 SAMD3Q8N6K7 520 aa16.54■□□□□ 0.24
VTI1A-209ENST00000496445 PIBF1Q8WXW3 757 aa16.54■□□□□ 0.24
VTI1A-209ENST00000496445 HERVK_113Q902F9 699 aa16.54■□□□□ 0.24
VTI1A-209ENST00000496445 KAT2BQ92831 832 aa16.54■□□□□ 0.24
VTI1A-209ENST00000496445 EMID1Q96A84 441 aaPredicted RBP16.54■□□□□ 0.24
VTI1A-209ENST00000496445 SCLYQ96I15 445 aa16.54■□□□□ 0.24
VTI1A-209ENST00000496445 SPZ1Q9BXG8 430 aa16.54■□□□□ 0.24
VTI1A-209ENST00000496445 CXXC1Q9P0U4 656 aaPredicted RBP16.54■□□□□ 0.24
VTI1A-209ENST00000496445 MRVI1Q9Y6F6 885 aa16.54■□□□□ 0.24
VTI1A-209ENST00000496445 TRIP12Q14669 1992 aaPredicted RBP16.54■□□□□ 0.24
VTI1A-209ENST00000496445 PTPRSQ13332 1948 aa16.53■□□□□ 0.24
VTI1A-209ENST00000496445 TMEM265A0A087WTH1 108 aa16.53■□□□□ 0.24
VTI1A-209ENST00000496445 GRXCR1A8MXD5 290 aa16.53■□□□□ 0.24
VTI1A-209ENST00000496445 GCOM1H8Y6P7 765 aaPredicted RBP16.53■□□□□ 0.24
VTI1A-209ENST00000496445 PLEKHA8P1O95397 391 aa16.53■□□□□ 0.24
VTI1A-209ENST00000496445 POLR2MP0CAP2 368 aa16.53■□□□□ 0.24
VTI1A-209ENST00000496445 MYCLP12524 364 aaPredicted RBP16.53■□□□□ 0.24
VTI1A-209ENST00000496445 RXRAP19793 462 aa16.53■□□□□ 0.24
VTI1A-209ENST00000496445 FAM47CQ5HY64 1035 aa16.53■□□□□ 0.24
VTI1A-209ENST00000496445 VSIG10LQ86VR7 867 aa16.53■□□□□ 0.24
VTI1A-209ENST00000496445 SLC17A8Q8NDX2 589 aa16.53■□□□□ 0.24
VTI1A-209ENST00000496445 CTCFLQ8NI51 663 aaPredicted RBP16.53■□□□□ 0.24
VTI1A-209ENST00000496445 GPKOWQ92917 476 aaPredicted RBP eCLIP16.53■□□□□ 0.24
VTI1A-209ENST00000496445 TMEM87BQ96K49 555 aa16.53■□□□□ 0.24
VTI1A-209ENST00000496445 CTAGE1Q96RT6 745 aa16.53■□□□□ 0.24
VTI1A-209ENST00000496445 LRRC2Q9BYS8 371 aa16.53■□□□□ 0.24
VTI1A-209ENST00000496445 TRANK1O15050 2925 aa16.53■□□□□ 0.24
VTI1A-209ENST00000496445 REV3LO60673 3130 aa16.52■□□□□ 0.24
VTI1A-209ENST00000496445 SUPT20HL2P0C7V6 817 aa16.52■□□□□ 0.24
VTI1A-209ENST00000496445 PBX2P40425 430 aa16.52■□□□□ 0.24
VTI1A-209ENST00000496445 PTPN11Q06124 597 aaPredicted RBP16.52■□□□□ 0.24
VTI1A-209ENST00000496445 TRAF1Q13077 416 aa16.52■□□□□ 0.24
VTI1A-209ENST00000496445 RAB11FIP4Q86YS3 637 aa16.52■□□□□ 0.24
VTI1A-209ENST00000496445 MYLIPQ8WY64 445 aa16.52■□□□□ 0.24
VTI1A-209ENST00000496445 ZFP91Q96JP5 570 aaPredicted RBP16.52■□□□□ 0.24
VTI1A-209ENST00000496445 PBX4Q9BYU1 374 aa16.52■□□□□ 0.24
VTI1A-209ENST00000496445 TET1Q8NFU7 2136 aa16.52■□□□□ 0.23
VTI1A-209ENST00000496445 CCDC69A6NI79 296 aa16.51■□□□□ 0.23
VTI1A-209ENST00000496445 HOXD8P13378 290 aaPredicted RBP16.51■□□□□ 0.23
VTI1A-209ENST00000496445 UBA1P22314 1058 aaKnown RBP16.51■□□□□ 0.23
VTI1A-209ENST00000496445 CCND2P30279 289 aa16.51■□□□□ 0.23
VTI1A-209ENST00000496445 KIF5BP33176 963 aa16.51■□□□□ 0.23
VTI1A-209ENST00000496445 LIFRP42702 1097 aa16.51■□□□□ 0.23
VTI1A-209ENST00000496445 SP2Q02086 613 aa16.51■□□□□ 0.23
VTI1A-209ENST00000496445 NFXL1Q6ZNB6 911 aa16.51■□□□□ 0.23
VTI1A-209ENST00000496445 OTOP2Q7RTS6 562 aa16.51■□□□□ 0.23
VTI1A-209ENST00000496445 SESTD1Q86VW0 696 aa16.51■□□□□ 0.23
VTI1A-209ENST00000496445 FCHSD1Q86WN1 690 aa16.51■□□□□ 0.23
VTI1A-209ENST00000496445 CMTR1Q8N1G2 835 aaKnown RBP16.51■□□□□ 0.23
VTI1A-209ENST00000496445 SRBD1Q8N5C6 995 aaKnown RBP16.51■□□□□ 0.23
VTI1A-209ENST00000496445 PPTC7Q8NI37 304 aa16.51■□□□□ 0.23
VTI1A-209ENST00000496445 FOXD4L1Q9NU39 408 aa16.51■□□□□ 0.23
VTI1A-209ENST00000496445 CUL9Q8IWT3 2517 aa16.5■□□□□ 0.23
VTI1A-209ENST00000496445 PITPNM1O00562 1244 aa16.5■□□□□ 0.23
VTI1A-209ENST00000496445 SORBS3O60504 671 aa16.5■□□□□ 0.23
VTI1A-209ENST00000496445 F2P00734 622 aa16.5■□□□□ 0.23
VTI1A-209ENST00000496445 FGBP02675 491 aa16.5■□□□□ 0.23
VTI1A-209ENST00000496445 ZNF286BP0CG31 522 aa16.5■□□□□ 0.23
VTI1A-209ENST00000496445 SMARCA1P28370 1054 aa16.5■□□□□ 0.23
VTI1A-209ENST00000496445 CHMP4BP1P59074 171 aa16.5■□□□□ 0.23
VTI1A-209ENST00000496445 LAMC2Q13753 1193 aa16.5■□□□□ 0.23
VTI1A-209ENST00000496445 DGKDQ16760 1214 aa16.5■□□□□ 0.23
VTI1A-209ENST00000496445 MYSM1Q5VVJ2 828 aa16.5■□□□□ 0.23
VTI1A-209ENST00000496445 GDF6Q6KF10 455 aaPredicted RBP16.5■□□□□ 0.23
VTI1A-209ENST00000496445 TIFAQ96CG3 184 aa16.5■□□□□ 0.23
VTI1A-209ENST00000496445 RRP36Q96EU6 259 aaKnown RBP16.5■□□□□ 0.23
VTI1A-209ENST00000496445 LZTS2Q9BRK4 669 aa16.5■□□□□ 0.23
VTI1A-209ENST00000496445 XIRP2A4UGR9 3374 aa16.49■□□□□ 0.23
VTI1A-209ENST00000496445 HAS3O00219 553 aa16.49■□□□□ 0.23
VTI1A-209ENST00000496445 MEIS2O14770 477 aa16.49■□□□□ 0.23
VTI1A-209ENST00000496445 GGPS1O95749 300 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms