RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 MROH7Q68CQ1 1323 aa18.8■□□□□ 0.6
SF3A1-209ENST00000496189 ADCY7P51828 1080 aa18.8■□□□□ 0.6
SF3A1-209ENST00000496189 CCT2P78371 535 aaKnown RBP18.8■□□□□ 0.6
SF3A1-209ENST00000496189 BEX3Q00994 111 aa18.8■□□□□ 0.6
SF3A1-209ENST00000496189 C1orf53Q5VUE5 145 aa18.8■□□□□ 0.6
SF3A1-209ENST00000496189 WWC2Q6AWC2 1192 aa18.8■□□□□ 0.6
SF3A1-209ENST00000496189 XRRA1Q6P2D8 792 aa18.8■□□□□ 0.6
SF3A1-209ENST00000496189 USP17L6PQ6QN14 398 aa18.8■□□□□ 0.6
SF3A1-209ENST00000496189 A0A0U1RQG5 324 aaPredicted RBP18.79■□□□□ 0.6
SF3A1-209ENST00000496189 MYADML2A6NDP7 307 aa18.79■□□□□ 0.6
SF3A1-209ENST00000496189 PRPF3O43395 683 aaKnown RBP18.79■□□□□ 0.6
SF3A1-209ENST00000496189 CDKL5O76039 1030 aa18.79■□□□□ 0.6
SF3A1-209ENST00000496189 GH1P01241 217 aa18.79■□□□□ 0.6
SF3A1-209ENST00000496189 SCG2P13521 617 aa18.79■□□□□ 0.6
SF3A1-209ENST00000496189 IFNAR1P17181 557 aa18.79■□□□□ 0.6
SF3A1-209ENST00000496189 NKX3-2P78367 333 aa18.79■□□□□ 0.6
SF3A1-209ENST00000496189 FUT2Q10981 343 aa18.79■□□□□ 0.6
SF3A1-209ENST00000496189 VSIG10LQ86VR7 867 aa18.79■□□□□ 0.6
SF3A1-209ENST00000496189 SLC26A6Q9BXS9 759 aa18.79■□□□□ 0.6
SF3A1-209ENST00000496189 RNF26Q9BY78 433 aaPredicted RBP18.79■□□□□ 0.6
SF3A1-209ENST00000496189 SEZ6LQ9BYH1 1024 aa18.79■□□□□ 0.6
SF3A1-209ENST00000496189 FAM217BQ9NTX9 383 aaPredicted RBP18.79■□□□□ 0.6
SF3A1-209ENST00000496189 BARHL2Q9NY43 387 aa18.79■□□□□ 0.6
SF3A1-209ENST00000496189 DCDC2CA8MYV0 355 aa18.78■□□□□ 0.6
SF3A1-209ENST00000496189 MEIS2O14770 477 aa18.78■□□□□ 0.6
SF3A1-209ENST00000496189 KPNA6O60684 536 aa18.78■□□□□ 0.6
SF3A1-209ENST00000496189 FOSP01100 380 aaPredicted RBP18.78■□□□□ 0.6
SF3A1-209ENST00000496189 SSRP1Q08945 709 aaKnown RBP18.78■□□□□ 0.6
SF3A1-209ENST00000496189 STK3Q13188 491 aa18.78■□□□□ 0.6
SF3A1-209ENST00000496189 PFKFB3Q16875 520 aaPredicted RBP18.78■□□□□ 0.6
SF3A1-209ENST00000496189 MCTP2Q6DN12 878 aa18.78■□□□□ 0.6
SF3A1-209ENST00000496189 CCSAPQ6IQ19 270 aaPredicted RBP18.78■□□□□ 0.6
SF3A1-209ENST00000496189 NLRX1Q86UT6 975 aa18.78■□□□□ 0.6
SF3A1-209ENST00000496189 CCDC148Q8NFR7 591 aa18.78■□□□□ 0.6
SF3A1-209ENST00000496189 SLKQ9H2G2 1235 aaPredicted RBP18.78■□□□□ 0.6
SF3A1-209ENST00000496189 C6orf50Q9HD87 102 aa18.78■□□□□ 0.6
SF3A1-209ENST00000496189 RIC8AQ9NPQ8 531 aa18.78■□□□□ 0.6
SF3A1-209ENST00000496189 SMCO2A6NFE2 343 aa18.77■□□□□ 0.6
SF3A1-209ENST00000496189 STXBP3O00186 592 aa18.77■□□□□ 0.6
SF3A1-209ENST00000496189 TLR3O15455 904 aaKnown RBP18.77■□□□□ 0.6
SF3A1-209ENST00000496189 TGFB3P10600 412 aa18.77■□□□□ 0.6
SF3A1-209ENST00000496189 SNX17Q15036 470 aa18.77■□□□□ 0.6
SF3A1-209ENST00000496189 TRIM60Q495X7 471 aa18.77■□□□□ 0.6
SF3A1-209ENST00000496189 PCNX4Q63HM2 1172 aa18.77■□□□□ 0.6
SF3A1-209ENST00000496189 DHX37Q8IY37 1157 aaKnown RBP18.77■□□□□ 0.6
SF3A1-209ENST00000496189 PHKBQ93100 1093 aa18.77■□□□□ 0.6
SF3A1-209ENST00000496189 PRDM5Q9NQX1 630 aaPredicted RBP18.77■□□□□ 0.6
SF3A1-209ENST00000496189 ZMYND8Q9ULU4 1186 aaPredicted RBP18.77■□□□□ 0.6
SF3A1-209ENST00000496189 FRMPD4Q14CM0 1322 aa18.76■□□□□ 0.59
SF3A1-209ENST00000496189 MYL3P08590 195 aa18.76■□□□□ 0.59
SF3A1-209ENST00000496189 GNA11P29992 359 aa18.76■□□□□ 0.59
SF3A1-209ENST00000496189 AK2P54819 239 aa18.76■□□□□ 0.59
SF3A1-209ENST00000496189 LAMC2Q13753 1193 aa18.76■□□□□ 0.59
SF3A1-209ENST00000496189 RABEP1Q15276 862 aa18.76■□□□□ 0.59
SF3A1-209ENST00000496189 UBE2SQ16763 222 aa18.76■□□□□ 0.59
SF3A1-209ENST00000496189 LY6KQ17RY6 165 aa18.76■□□□□ 0.59
SF3A1-209ENST00000496189 CXCL17Q6UXB2 119 aa18.76■□□□□ 0.59
SF3A1-209ENST00000496189 BICD2Q8TD16 824 aa18.76■□□□□ 0.59
SF3A1-209ENST00000496189 CDHR1Q96JP9 859 aa18.76■□□□□ 0.59
SF3A1-209ENST00000496189 TBC1D32Q96NH3 1257 aa18.76■□□□□ 0.59
SF3A1-209ENST00000496189 LBHD1Q9BQE6 289 aaPredicted RBP18.76■□□□□ 0.59
SF3A1-209ENST00000496189 NCOA5Q9HCD5 579 aaKnown RBP18.76■□□□□ 0.59
SF3A1-209ENST00000496189 ALPK3Q96L96 1907 aa18.76■□□□□ 0.59
SF3A1-209ENST00000496189 KIAA1217Q5T5P2 1943 aa18.75■□□□□ 0.59
SF3A1-209ENST00000496189 PQBP1O60828 265 aaKnown RBP18.75■□□□□ 0.59
SF3A1-209ENST00000496189 SYN1P17600 705 aa18.75■□□□□ 0.59
SF3A1-209ENST00000496189 AP3B2Q13367 1082 aa18.75■□□□□ 0.59
SF3A1-209ENST00000496189 CCDC62Q6P9F0 684 aa18.75■□□□□ 0.59
SF3A1-209ENST00000496189 IL31RAQ8NI17 732 aa18.75■□□□□ 0.59
SF3A1-209ENST00000496189 COPS5Q92905 334 aa18.75■□□□□ 0.59
SF3A1-209ENST00000496189 LARP6Q9BRS8 491 aaKnown RBP18.75■□□□□ 0.59
SF3A1-209ENST00000496189 MTG1Q9BT17 334 aaPredicted RBP18.75■□□□□ 0.59
SF3A1-209ENST00000496189 PCDHA6Q9UN73 950 aa18.75■□□□□ 0.59
SF3A1-209ENST00000496189 PCDHA8Q9Y5H6 950 aa18.75■□□□□ 0.59
SF3A1-209ENST00000496189 ARVCFO00192 962 aa18.74■□□□□ 0.59
SF3A1-209ENST00000496189 CTAGE5O15320 804 aa18.74■□□□□ 0.59
SF3A1-209ENST00000496189 FIBPO43427 364 aa18.74■□□□□ 0.59
SF3A1-209ENST00000496189 ST18O60284 1047 aa18.74■□□□□ 0.59
SF3A1-209ENST00000496189 ARIH2O95376 493 aa18.74■□□□□ 0.59
SF3A1-209ENST00000496189 DEXIO95424 95 aa18.74■□□□□ 0.59
SF3A1-209ENST00000496189 CLTBP09497 229 aa18.74■□□□□ 0.59
SF3A1-209ENST00000496189 XBP1P17861 261 aa18.74■□□□□ 0.59
SF3A1-209ENST00000496189 IRX5P78411 483 aaPredicted RBP18.74■□□□□ 0.59
SF3A1-209ENST00000496189 TLE2Q04725 743 aa18.74■□□□□ 0.59
SF3A1-209ENST00000496189 DGKDQ16760 1214 aa18.74■□□□□ 0.59
SF3A1-209ENST00000496189 TOX2Q96NM4 488 aa18.74■□□□□ 0.59
SF3A1-209ENST00000496189 MLXIPQ9HAP2 919 aa18.74■□□□□ 0.59
SF3A1-209ENST00000496189 RTEL1Q9NZ71 1219 aa18.74■□□□□ 0.59
SF3A1-209ENST00000496189 DDX41Q9UJV9 622 aaKnown RBP18.74■□□□□ 0.59
SF3A1-209ENST00000496189 ESYT2A0FGR8 921 aa18.73■□□□□ 0.59
SF3A1-209ENST00000496189 A6NJR5 290 aa18.73■□□□□ 0.59
SF3A1-209ENST00000496189 ITGA7Q13683 1181 aa18.73■□□□□ 0.59
SF3A1-209ENST00000496189 NEDD9Q14511 834 aa18.73■□□□□ 0.59
SF3A1-209ENST00000496189 NTRK3Q16288 839 aa18.73■□□□□ 0.59
SF3A1-209ENST00000496189 TMEM63BQ5T3F8 832 aa18.73■□□□□ 0.59
SF3A1-209ENST00000496189 CHRDL2Q6WN34 429 aa18.73■□□□□ 0.59
SF3A1-209ENST00000496189 GIMAP8Q8ND71 665 aaPredicted RBP18.73■□□□□ 0.59
SF3A1-209ENST00000496189 INPP4AQ96PE3 977 aaPredicted RBP18.73■□□□□ 0.59
SF3A1-209ENST00000496189 KIF2CQ99661 725 aa18.73■□□□□ 0.59
SF3A1-209ENST00000496189 SH3GLB2Q9NR46 395 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms