RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 PCDHA1Q9Y5I3 950 aa15.85■□□□□ 0.13
COL6A3-211ENST00000491233 MRVI1Q9Y6F6 885 aa15.85■□□□□ 0.13
COL6A3-211ENST00000491233 PTPRSQ13332 1948 aa15.85■□□□□ 0.13
COL6A3-211ENST00000491233 EIF3JO75822 258 aaKnown RBP15.84■□□□□ 0.13
COL6A3-211ENST00000491233 PFKMP08237 780 aa15.84■□□□□ 0.13
COL6A3-211ENST00000491233 HOXA13P31271 388 aaPredicted RBP15.84■□□□□ 0.13
COL6A3-211ENST00000491233 ANTXR2P58335 489 aa15.84■□□□□ 0.13
COL6A3-211ENST00000491233 SART3Q15020 963 aaKnown RBP15.84■□□□□ 0.13
COL6A3-211ENST00000491233 PDCD2LQ9BRP1 358 aa15.84■□□□□ 0.13
COL6A3-211ENST00000491233 RIOX1Q9H6W3 641 aa15.84■□□□□ 0.13
COL6A3-211ENST00000491233 DDX41Q9UJV9 622 aaKnown RBP15.84■□□□□ 0.13
COL6A3-211ENST00000491233 YBX2Q9Y2T7 364 aaKnown RBP15.84■□□□□ 0.13
COL6A3-211ENST00000491233 SLC4A7Q9Y6M7 1214 aa15.84■□□□□ 0.13
COL6A3-211ENST00000491233 DOCK5Q9H7D0 1870 aa15.84■□□□□ 0.13
COL6A3-211ENST00000491233 PITPNM1O00562 1244 aa15.83■□□□□ 0.12
COL6A3-211ENST00000491233 CYTH3O43739 400 aa15.83■□□□□ 0.12
COL6A3-211ENST00000491233 MYCLP12524 364 aaPredicted RBP15.83■□□□□ 0.12
COL6A3-211ENST00000491233 TROAPQ12815 778 aa15.83■□□□□ 0.12
COL6A3-211ENST00000491233 TMEM67Q5HYA8 995 aa15.83■□□□□ 0.12
COL6A3-211ENST00000491233 MB21D2Q8IYB1 491 aaPredicted RBP15.83■□□□□ 0.12
COL6A3-211ENST00000491233 USP38Q8NB14 1042 aa15.83■□□□□ 0.12
COL6A3-211ENST00000491233 IL31RAQ8NI17 732 aa15.83■□□□□ 0.12
COL6A3-211ENST00000491233 KAT2BQ92831 832 aa15.83■□□□□ 0.12
COL6A3-211ENST00000491233 GAS2L1Q99501 681 aaPredicted RBP15.83■□□□□ 0.12
COL6A3-211ENST00000491233 PRDM12Q9H4Q4 367 aa15.83■□□□□ 0.12
COL6A3-211ENST00000491233 RBM8AQ9Y5S9 174 aaKnown RBP15.83■□□□□ 0.12
COL6A3-211ENST00000491233 TET1Q8NFU7 2136 aa15.83■□□□□ 0.12
COL6A3-211ENST00000491233 MYO9BQ13459 2157 aa15.82■□□□□ 0.12
COL6A3-211ENST00000491233 CDH23Q9H251 3354 aa15.82■□□□□ 0.12
COL6A3-211ENST00000491233 IQCF3P0C7M6 154 aa15.82■□□□□ 0.12
COL6A3-211ENST00000491233 CASTP20810 708 aaKnown RBP15.82■□□□□ 0.12
COL6A3-211ENST00000491233 RFC2P35250 354 aa15.82■□□□□ 0.12
COL6A3-211ENST00000491233 RABGGTBP53611 331 aa15.82■□□□□ 0.12
COL6A3-211ENST00000491233 BFSP2Q13515 415 aa15.82■□□□□ 0.12
COL6A3-211ENST00000491233 PGM5Q15124 567 aa15.82■□□□□ 0.12
COL6A3-211ENST00000491233 PTGISQ16647 500 aa15.82■□□□□ 0.12
COL6A3-211ENST00000491233 CATIPQ7Z7H3 387 aa15.82■□□□□ 0.12
COL6A3-211ENST00000491233 RETREG2Q8NC44 543 aa15.82■□□□□ 0.12
COL6A3-211ENST00000491233 MAP4K1Q92918 833 aa15.82■□□□□ 0.12
COL6A3-211ENST00000491233 EMID1Q96A84 441 aaPredicted RBP15.82■□□□□ 0.12
COL6A3-211ENST00000491233 MAP3K20Q9NYL2 800 aaKnown RBP15.82■□□□□ 0.12
COL6A3-211ENST00000491233 GCOM1H8Y6P7 765 aaPredicted RBP15.81■□□□□ 0.12
COL6A3-211ENST00000491233 SORBS3O60504 671 aa15.81■□□□□ 0.12
COL6A3-211ENST00000491233 RGS20O76081 388 aa15.81■□□□□ 0.12
COL6A3-211ENST00000491233 POLR2MP0CAP2 368 aa15.81■□□□□ 0.12
COL6A3-211ENST00000491233 ZNF286BP0CG31 522 aa15.81■□□□□ 0.12
COL6A3-211ENST00000491233 ACTN1P12814 892 aa15.81■□□□□ 0.12
COL6A3-211ENST00000491233 ATP2A2P16615 1042 aaKnown RBP15.81■□□□□ 0.12
COL6A3-211ENST00000491233 TRAF1Q13077 416 aa15.81■□□□□ 0.12
COL6A3-211ENST00000491233 LAMC2Q13753 1193 aa15.81■□□□□ 0.12
COL6A3-211ENST00000491233 DGKDQ16760 1214 aa15.81■□□□□ 0.12
COL6A3-211ENST00000491233 GDF6Q6KF10 455 aaPredicted RBP15.81■□□□□ 0.12
COL6A3-211ENST00000491233 SESTD1Q86VW0 696 aa15.81■□□□□ 0.12
COL6A3-211ENST00000491233 FCHSD1Q86WN1 690 aa15.81■□□□□ 0.12
COL6A3-211ENST00000491233 SAMD3Q8N6K7 520 aa15.81■□□□□ 0.12
COL6A3-211ENST00000491233 CCDC155Q8N6L0 562 aa15.81■□□□□ 0.12
COL6A3-211ENST00000491233 PIBF1Q8WXW3 757 aa15.81■□□□□ 0.12
COL6A3-211ENST00000491233 CTAGE1Q96RT6 745 aa15.81■□□□□ 0.12
COL6A3-211ENST00000491233 SLC28A3Q9HAS3 691 aa15.81■□□□□ 0.12
COL6A3-211ENST00000491233 EYSQ5T1H1 3165 aa15.81■□□□□ 0.12
COL6A3-211ENST00000491233 UNC80Q8N2C7 3258 aa15.8■□□□□ 0.12
COL6A3-211ENST00000491233 PNMA6FA0A0J9YX94 578 aa15.8■□□□□ 0.12
COL6A3-211ENST00000491233 F2P00734 622 aa15.8■□□□□ 0.12
COL6A3-211ENST00000491233 MYOGP15173 224 aa15.8■□□□□ 0.12
COL6A3-211ENST00000491233 PSEN2P49810 448 aa15.8■□□□□ 0.12
COL6A3-211ENST00000491233 PPP2R2DQ66LE6 453 aa15.8■□□□□ 0.12
COL6A3-211ENST00000491233 DHX37Q8IY37 1157 aaKnown RBP15.8■□□□□ 0.12
COL6A3-211ENST00000491233 ZNF654Q8IZM8 581 aa15.8■□□□□ 0.12
COL6A3-211ENST00000491233 PPTC7Q8NI37 304 aa15.8■□□□□ 0.12
COL6A3-211ENST00000491233 IGDCC4Q8TDY8 1250 aa15.8■□□□□ 0.12
COL6A3-211ENST00000491233 ZFP91Q96JP5 570 aaPredicted RBP15.8■□□□□ 0.12
COL6A3-211ENST00000491233 ALG1Q9BT22 464 aa15.8■□□□□ 0.12
COL6A3-211ENST00000491233 MYL10Q9BUA6 226 aa15.8■□□□□ 0.12
COL6A3-211ENST00000491233 KATNAL1Q9BW62 490 aa15.8■□□□□ 0.12
COL6A3-211ENST00000491233 HDAC6Q9UBN7 1215 aa15.8■□□□□ 0.12
COL6A3-211ENST00000491233 GTF2IRD1Q9UHL9 959 aa15.8■□□□□ 0.12
COL6A3-211ENST00000491233 PCDHA11Q9Y5I1 949 aa15.8■□□□□ 0.12
COL6A3-211ENST00000491233 DDAH1O94760 285 aa15.79■□□□□ 0.12
COL6A3-211ENST00000491233 GGPS1O95749 300 aa15.79■□□□□ 0.12
COL6A3-211ENST00000491233 UBA1P22314 1058 aaKnown RBP15.79■□□□□ 0.12
COL6A3-211ENST00000491233 CCND2P30279 289 aa15.79■□□□□ 0.12
COL6A3-211ENST00000491233 ADGRE1Q14246 886 aa15.79■□□□□ 0.12
COL6A3-211ENST00000491233 MFSD10Q14728 455 aa15.79■□□□□ 0.12
COL6A3-211ENST00000491233 VSIG10LQ86VR7 867 aa15.79■□□□□ 0.12
COL6A3-211ENST00000491233 CTCFLQ8NI51 663 aaPredicted RBP15.79■□□□□ 0.12
COL6A3-211ENST00000491233 CAGE1Q8TC20 777 aa15.79■□□□□ 0.12
COL6A3-211ENST00000491233 AFAP1L1Q8TED9 768 aa15.79■□□□□ 0.12
COL6A3-211ENST00000491233 DHX38Q92620 1227 aaKnown RBP15.79■□□□□ 0.12
COL6A3-211ENST00000491233 SLC9A7Q96T83 725 aa15.79■□□□□ 0.12
COL6A3-211ENST00000491233 FTOQ9C0B1 505 aaKnown RBP eCLIP15.79■□□□□ 0.12
COL6A3-211ENST00000491233 LY9Q9HBG7 655 aa15.79■□□□□ 0.12
COL6A3-211ENST00000491233 COL4A4P53420 1690 aaPredicted RBP15.79■□□□□ 0.12
COL6A3-211ENST00000491233 FRMPD4Q14CM0 1322 aa15.78■□□□□ 0.12
COL6A3-211ENST00000491233 HAS3O00219 553 aa15.78■□□□□ 0.12
COL6A3-211ENST00000491233 PRC1O43663 620 aa15.78■□□□□ 0.12
COL6A3-211ENST00000491233 HOXD8P13378 290 aaPredicted RBP15.78■□□□□ 0.12
COL6A3-211ENST00000491233 KIAA0753Q2KHM9 967 aa15.78■□□□□ 0.12
COL6A3-211ENST00000491233 HSDL1Q3SXM5 330 aa15.78■□□□□ 0.12
COL6A3-211ENST00000491233 CELF3Q5SZQ8 465 aaKnown RBP15.78■□□□□ 0.12
COL6A3-211ENST00000491233 MYSM1Q5VVJ2 828 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms