RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 GRIN1Q05586 938 aa18.01■□□□□ 0.47
SYNE1-227ENST00000489156 AP3B2Q13367 1082 aa18.01■□□□□ 0.47
SYNE1-227ENST00000489156 SASS6Q6UVJ0 657 aa18.01■□□□□ 0.47
SYNE1-227ENST00000489156 NSMFQ6X4W1 530 aa18.01■□□□□ 0.47
SYNE1-227ENST00000489156 CKAP2LQ8IYA6 745 aa18.01■□□□□ 0.47
SYNE1-227ENST00000489156 FBXO40Q9UH90 709 aa18.01■□□□□ 0.47
SYNE1-227ENST00000489156 GPR25O00155 361 aa18.01■□□□□ 0.47
SYNE1-227ENST00000489156 CAVIN2O95810 425 aa18.01■□□□□ 0.47
SYNE1-227ENST00000489156 LONP1P36776 959 aaKnown RBP18.01■□□□□ 0.47
SYNE1-227ENST00000489156 SP3Q02447 781 aa18.01■□□□□ 0.47
SYNE1-227ENST00000489156 USP17L6PQ6QN14 398 aa18.01■□□□□ 0.47
SYNE1-227ENST00000489156 NAP1L4Q99733 375 aaKnown RBP18.01■□□□□ 0.47
SYNE1-227ENST00000489156 TMEM260Q9NX78 707 aa18.01■□□□□ 0.47
SYNE1-227ENST00000489156 MRVI1Q9Y6F6 885 aa18.01■□□□□ 0.47
SYNE1-227ENST00000489156 FOSP01100 380 aaPredicted RBP18■□□□□ 0.47
SYNE1-227ENST00000489156 MAPK4P31152 587 aa18■□□□□ 0.47
SYNE1-227ENST00000489156 HOXA13P31271 388 aaPredicted RBP18■□□□□ 0.47
SYNE1-227ENST00000489156 UBE2SQ16763 222 aa18■□□□□ 0.47
SYNE1-227ENST00000489156 LETM2Q2VYF4 491 aa18■□□□□ 0.47
SYNE1-227ENST00000489156 GPR142Q7Z601 462 aa18■□□□□ 0.47
SYNE1-227ENST00000489156 MCF2L2Q86YR7 1114 aa18■□□□□ 0.47
SYNE1-227ENST00000489156 ANKRD35Q8N283 1001 aa18■□□□□ 0.47
SYNE1-227ENST00000489156 PYM1Q9BRP8 204 aaKnown RBP18■□□□□ 0.47
SYNE1-227ENST00000489156 A1CFQ9NQ94 594 aaKnown RBP18■□□□□ 0.47
SYNE1-227ENST00000489156 VWA3AA6NCI4 1184 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 PIK3CDO00329 1044 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 MEIS2O14770 477 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 CCNT1O60563 726 aaKnown RBP17.99■□□□□ 0.47
SYNE1-227ENST00000489156 CTGFP29279 349 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 LACTBP83111 547 aaPredicted RBP17.99■□□□□ 0.47
SYNE1-227ENST00000489156 TYRO3Q06418 890 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 SPECC1Q5M775 1068 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 PPP4R3AQ6IN85 833 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 DTHD1Q6ZMT9 781 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 RNF207Q6ZRF8 634 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 ARHGAP39Q9C0H5 1083 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 HOOK1Q9UJC3 728 aaKnown RBP17.99■□□□□ 0.47
SYNE1-227ENST00000489156 LCTP09848 1927 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 GCOM1H8Y6P7 765 aaPredicted RBP17.99■□□□□ 0.47
SYNE1-227ENST00000489156 NEMFO60524 1076 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 POLR2MP0CAP2 368 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 FCER1AP12319 257 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 GCFC2P16383 781 aaKnown RBP17.99■□□□□ 0.47
SYNE1-227ENST00000489156 RPS6P62753 249 aaKnown RBP17.99■□□□□ 0.47
SYNE1-227ENST00000489156 BAATQ14032 418 aaPredicted RBP17.99■□□□□ 0.47
SYNE1-227ENST00000489156 KANK3Q6NY19 840 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 SLC30A10Q6XR72 485 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 KRBA2Q6ZNG9 492 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 PLEKHH3Q7Z736 793 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 CCDC34Q96HJ3 373 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 MMP19Q99542 508 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 CYP39A1Q9NYL5 469 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 KIAA1468Q9P260 1216 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 IVNS1ABPQ9Y6Y0 642 aa17.99■□□□□ 0.47
SYNE1-227ENST00000489156 HSD17B4P51659 736 aa17.98■□□□□ 0.47
SYNE1-227ENST00000489156 USP11P51784 963 aa17.98■□□□□ 0.47
SYNE1-227ENST00000489156 CAP1Q01518 475 aa17.98■□□□□ 0.47
SYNE1-227ENST00000489156 KCTD2Q14681 263 aa17.98■□□□□ 0.47
SYNE1-227ENST00000489156 PURBQ96QR8 312 aaKnown RBP17.98■□□□□ 0.47
SYNE1-227ENST00000489156 USP25Q9UHP3 1055 aa17.98■□□□□ 0.47
SYNE1-227ENST00000489156 PLXNA1Q9UIW2 1896 aa17.98■□□□□ 0.47
SYNE1-227ENST00000489156 CASP8AP2Q9UKL3 1982 aa17.98■□□□□ 0.47
SYNE1-227ENST00000489156 OR52Z1P0C646 297 aa17.97■□□□□ 0.47
SYNE1-227ENST00000489156 PSMC4P43686 418 aa17.97■□□□□ 0.47
SYNE1-227ENST00000489156 UVSSAQ2YD98 709 aa17.97■□□□□ 0.47
SYNE1-227ENST00000489156 FCHSD1Q86WN1 690 aa17.97■□□□□ 0.47
SYNE1-227ENST00000489156 CNNM3Q8NE01 707 aa17.97■□□□□ 0.47
SYNE1-227ENST00000489156 ZNF296Q8WUU4 475 aaPredicted RBP17.97■□□□□ 0.47
SYNE1-227ENST00000489156 SYMPKQ92797 1274 aaKnown RBP17.97■□□□□ 0.47
SYNE1-227ENST00000489156 AK8Q96MA6 479 aa17.97■□□□□ 0.47
SYNE1-227ENST00000489156 COL20A1Q9P218 1284 aa17.97■□□□□ 0.47
SYNE1-227ENST00000489156 TNPO2O14787 897 aaKnown RBP17.97■□□□□ 0.47
SYNE1-227ENST00000489156 POLR2DO15514 142 aaKnown RBP17.97■□□□□ 0.47
SYNE1-227ENST00000489156 STRNO43815 780 aa17.97■□□□□ 0.47
SYNE1-227ENST00000489156 PGK2P07205 417 aa17.97■□□□□ 0.47
SYNE1-227ENST00000489156 IL17AQ16552 155 aa17.97■□□□□ 0.47
SYNE1-227ENST00000489156 LONRF3Q496Y0 759 aa17.97■□□□□ 0.47
SYNE1-227ENST00000489156 MOXD1Q6UVY6 613 aa17.97■□□□□ 0.47
SYNE1-227ENST00000489156 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.97■□□□□ 0.47
SYNE1-227ENST00000489156 SYTL5Q8TDW5 730 aaPredicted RBP17.97■□□□□ 0.47
SYNE1-227ENST00000489156 EPSTI1Q96J88 318 aa17.97■□□□□ 0.47
SYNE1-227ENST00000489156 TRIM47Q96LD4 638 aa17.97■□□□□ 0.47
SYNE1-227ENST00000489156 TMEM60Q9H2L4 133 aa17.97■□□□□ 0.47
SYNE1-227ENST00000489156 PFASO15067 1338 aa17.96■□□□□ 0.47
SYNE1-227ENST00000489156 MYH7BA7E2Y1 1941 aa17.96■□□□□ 0.47
SYNE1-227ENST00000489156 FKTNO75072 461 aa17.96■□□□□ 0.47
SYNE1-227ENST00000489156 ADORA2AP29274 412 aa17.96■□□□□ 0.47
SYNE1-227ENST00000489156 FCGRTP55899 365 aa17.96■□□□□ 0.47
SYNE1-227ENST00000489156 CNTN2Q02246 1040 aa17.96■□□□□ 0.47
SYNE1-227ENST00000489156 GHRHRQ02643 423 aa17.96■□□□□ 0.47
SYNE1-227ENST00000489156 KIF22Q14807 665 aa17.96■□□□□ 0.47
SYNE1-227ENST00000489156 USP49Q70CQ1 688 aa17.96■□□□□ 0.47
SYNE1-227ENST00000489156 CD99L2Q8TCZ2 262 aa17.96■□□□□ 0.47
SYNE1-227ENST00000489156 ANP32BQ92688 251 aaKnown RBP17.96■□□□□ 0.47
SYNE1-227ENST00000489156 MAP3K20Q9NYL2 800 aaKnown RBP17.96■□□□□ 0.47
SYNE1-227ENST00000489156 EDIL3O43854 480 aa17.95■□□□□ 0.46
SYNE1-227ENST00000489156 TXLNAP40222 546 aa17.95■□□□□ 0.46
SYNE1-227ENST00000489156 STX1AQ16623 288 aa17.95■□□□□ 0.46
SYNE1-227ENST00000489156 SAMD3Q8N6K7 520 aa17.95■□□□□ 0.46
SYNE1-227ENST00000489156 MTMR9Q96QG7 549 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms