RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 MCTP2Q6DN12 878 aa11.8□□□□□ -0.52
SKA1-204ENST00000488454 OTOP1Q7RTM1 612 aa11.8□□□□□ -0.52
SKA1-204ENST00000488454 FCHSD1Q86WN1 690 aa11.8□□□□□ -0.52
SKA1-204ENST00000488454 TRMT44Q8IYL2 757 aaKnown RBP11.8□□□□□ -0.52
SKA1-204ENST00000488454 TBC1D5Q92609 795 aa11.8□□□□□ -0.52
SKA1-204ENST00000488454 AIFM3Q96NN9 605 aa11.8□□□□□ -0.52
SKA1-204ENST00000488454 ZMYND12Q9H0C1 365 aa11.8□□□□□ -0.52
SKA1-204ENST00000488454 PRDM10Q9NQV6 1147 aa11.8□□□□□ -0.52
SKA1-204ENST00000488454 ADD3Q9UEY8 706 aaKnown RBP11.8□□□□□ -0.52
SKA1-204ENST00000488454 RABGEF1Q9UJ41 708 aa11.8□□□□□ -0.52
SKA1-204ENST00000488454 DIS3Q9Y2L1 958 aaKnown RBP11.8□□□□□ -0.52
SKA1-204ENST00000488454 BAZ2BQ9UIF8 2168 aaKnown RBP11.79□□□□□ -0.52
SKA1-204ENST00000488454 H3BQV1 296 aa11.79□□□□□ -0.52
SKA1-204ENST00000488454 PIK3CDO00329 1044 aa11.79□□□□□ -0.52
SKA1-204ENST00000488454 COBLO75128 1261 aa11.79□□□□□ -0.52
SKA1-204ENST00000488454 FOSP01100 380 aaPredicted RBP11.79□□□□□ -0.52
SKA1-204ENST00000488454 XRCC5P13010 732 aaKnown RBP11.79□□□□□ -0.52
SKA1-204ENST00000488454 PDCP20941 246 aa11.79□□□□□ -0.52
SKA1-204ENST00000488454 HOXA13P31271 388 aaPredicted RBP11.79□□□□□ -0.52
SKA1-204ENST00000488454 HSD17B4P51659 736 aa11.79□□□□□ -0.52
SKA1-204ENST00000488454 PKN2Q16513 984 aaKnown RBP11.79□□□□□ -0.52
SKA1-204ENST00000488454 ZNF792Q3KQV3 632 aa11.79□□□□□ -0.52
SKA1-204ENST00000488454 ARHGEF16Q5VV41 709 aa11.79□□□□□ -0.52
SKA1-204ENST00000488454 LARP1BQ659C4 914 aaKnown RBP11.79□□□□□ -0.52
SKA1-204ENST00000488454 USP17L6PQ6QN14 398 aa11.79□□□□□ -0.52
SKA1-204ENST00000488454 SLC30A10Q6XR72 485 aa11.79□□□□□ -0.52
SKA1-204ENST00000488454 CTU1Q7Z7A3 348 aaKnown RBP11.79□□□□□ -0.52
SKA1-204ENST00000488454 DNERQ8NFT8 737 aa11.79□□□□□ -0.52
SKA1-204ENST00000488454 SYTL5Q8TDW5 730 aaPredicted RBP11.79□□□□□ -0.52
SKA1-204ENST00000488454 NSUN6Q8TEA1 469 aaKnown RBP11.79□□□□□ -0.52
SKA1-204ENST00000488454 APBA2Q99767 749 aa11.79□□□□□ -0.52
SKA1-204ENST00000488454 EHMT1Q9H9B1 1298 aa11.79□□□□□ -0.52
SKA1-204ENST00000488454 PCDHA4Q9UN74 947 aa11.79□□□□□ -0.52
SKA1-204ENST00000488454 GABRQQ9UN88 632 aa11.79□□□□□ -0.52
SKA1-204ENST00000488454 KCNJ14Q9UNX9 436 aa11.79□□□□□ -0.52
SKA1-204ENST00000488454 DNAJC25-GNG10A0A024R161 153 aa11.78□□□□□ -0.52
SKA1-204ENST00000488454 ASB14A6NK59 587 aa11.78□□□□□ -0.52
SKA1-204ENST00000488454 MEIS2O14770 477 aa11.78□□□□□ -0.52
SKA1-204ENST00000488454 OPLAHO14841 1288 aa11.78□□□□□ -0.52
SKA1-204ENST00000488454 HOXC6P09630 235 aa11.78□□□□□ -0.52
SKA1-204ENST00000488454 CNTN2Q02246 1040 aa11.78□□□□□ -0.52
SKA1-204ENST00000488454 GHRHRQ02643 423 aa11.78□□□□□ -0.52
SKA1-204ENST00000488454 IRF5Q13568 498 aa11.78□□□□□ -0.52
SKA1-204ENST00000488454 GNL2Q13823 731 aaKnown RBP11.78□□□□□ -0.52
SKA1-204ENST00000488454 UBE2SQ16763 222 aa11.78□□□□□ -0.52
SKA1-204ENST00000488454 BLIDQ8IZY5 108 aa11.78□□□□□ -0.52
SKA1-204ENST00000488454 REXO1Q8N1G1 1221 aaKnown RBP11.78□□□□□ -0.52
SKA1-204ENST00000488454 FAM133AQ8N9E0 248 aa11.78□□□□□ -0.52
SKA1-204ENST00000488454 USP6NLQ92738 828 aa11.78□□□□□ -0.52
SKA1-204ENST00000488454 RMDN3Q96TC7 470 aa11.78□□□□□ -0.52
SKA1-204ENST00000488454 PHF20Q9BVI0 1012 aa11.78□□□□□ -0.52
SKA1-204ENST00000488454 NPDC1Q9NQX5 325 aaPredicted RBP11.78□□□□□ -0.52
SKA1-204ENST00000488454 BIN2Q9UBW5 565 aaPredicted RBP11.78□□□□□ -0.52
SKA1-204ENST00000488454 A0A0G2JMZ2 1700 aa11.77□□□□□ -0.52
SKA1-204ENST00000488454 LOC102724159A0A0B4J2E5 919 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 ADCY3O60266 1144 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 PDIA4P13667 645 aaKnown RBP11.77□□□□□ -0.53
SKA1-204ENST00000488454 KRT2P35908 639 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 PRSS12P56730 875 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 GUCY1B3Q02153 619 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 AP3B2Q13367 1082 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 PWP2Q15269 919 aaKnown RBP11.77□□□□□ -0.53
SKA1-204ENST00000488454 JAKMIP3Q5VZ66 844 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 MFSD14CQ5VZR4 134 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 KRT40Q6A162 431 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 MSL3Q8N5Y2 521 aaKnown RBP11.77□□□□□ -0.53
SKA1-204ENST00000488454 FBXO18Q8NFZ0 1043 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 NPLOC4Q8TAT6 608 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 MAML3Q96JK9 1138 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 TAAR1Q96RJ0 339 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 IWS1Q96ST2 819 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 GJB4Q9NTQ9 266 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 KIAA1468Q9P260 1216 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 PCDHA6Q9UN73 950 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 PTPN22Q9Y2R2 807 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 RBM19Q9Y4C8 960 aaKnown RBP11.77□□□□□ -0.53
SKA1-204ENST00000488454 PCDHA8Q9Y5H6 950 aa11.77□□□□□ -0.53
SKA1-204ENST00000488454 PARP14Q460N5 1801 aa11.76□□□□□ -0.53
SKA1-204ENST00000488454 CCDC194A0A1B0GVG4 234 aa11.76□□□□□ -0.53
SKA1-204ENST00000488454 SOWAHBA6NEL2 793 aa11.76□□□□□ -0.53
SKA1-204ENST00000488454 MMP1P03956 469 aa11.76□□□□□ -0.53
SKA1-204ENST00000488454 EIF2AK2P19525 551 aaKnown RBP11.76□□□□□ -0.53
SKA1-204ENST00000488454 ALDH5A1P51649 535 aaPredicted RBP11.76□□□□□ -0.53
SKA1-204ENST00000488454 CAP1Q01518 475 aa11.76□□□□□ -0.53
SKA1-204ENST00000488454 PDE4DQ08499 809 aa11.76□□□□□ -0.53
SKA1-204ENST00000488454 OLFML2BQ68BL8 750 aa11.76□□□□□ -0.53
SKA1-204ENST00000488454 SMYD5Q6GMV2 418 aa11.76□□□□□ -0.53
SKA1-204ENST00000488454 DAGLBQ8NCG7 672 aa11.76□□□□□ -0.53
SKA1-204ENST00000488454 PXYLP1Q8TE99 480 aa11.76□□□□□ -0.53
SKA1-204ENST00000488454 PURBQ96QR8 312 aaKnown RBP11.76□□□□□ -0.53
SKA1-204ENST00000488454 PXMP2Q9NR77 195 aa11.76□□□□□ -0.53
SKA1-204ENST00000488454 TMEM260Q9NX78 707 aa11.76□□□□□ -0.53
SKA1-204ENST00000488454 COL20A1Q9P218 1284 aa11.76□□□□□ -0.53
SKA1-204ENST00000488454 COL11A1P12107 1806 aaPredicted RBP11.76□□□□□ -0.53
SKA1-204ENST00000488454 MYCLP12524 364 aaPredicted RBP11.75□□□□□ -0.53
SKA1-204ENST00000488454 GRK4P32298 578 aa11.75□□□□□ -0.53
SKA1-204ENST00000488454 CLK2P49760 499 aaKnown RBP11.75□□□□□ -0.53
SKA1-204ENST00000488454 STXBP2Q15833 593 aa11.75□□□□□ -0.53
SKA1-204ENST00000488454 MCTP1Q6DN14 999 aa11.75□□□□□ -0.53
SKA1-204ENST00000488454 XRRA1Q6P2D8 792 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms