RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 CCDC155Q8N6L0 562 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 TBC1D22AQ8WUA7 517 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 SECISBP2LQ93073 1101 aaKnown RBP19.95■□□□□ 0.78
VIM-206ENST00000487938 PLAGL2Q9UPG8 496 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 AFF2P51816 1311 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 ONECUT3O60422 494 aaPredicted RBP19.95■□□□□ 0.78
VIM-206ENST00000487938 TUBBP07437 444 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 GYS1P13807 737 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 EIF4A3P38919 411 aaKnown RBP19.95■□□□□ 0.78
VIM-206ENST00000487938 CDK17Q00537 523 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 PDIA5Q14554 519 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 RRAGAQ7L523 313 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 SEPT12Q8IYM1 358 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 GUF1Q8N442 669 aaKnown RBP19.95■□□□□ 0.78
VIM-206ENST00000487938 DRC1Q96MC2 740 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 PURBQ96QR8 312 aaKnown RBP19.95■□□□□ 0.78
VIM-206ENST00000487938 MXD3Q9BW11 206 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 RAB34Q9BZG1 259 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 MLXIPQ9HAP2 919 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 PCDHA13Q9Y5I0 950 aa19.95■□□□□ 0.78
VIM-206ENST00000487938 BBOX1O75936 387 aa19.94■□□□□ 0.78
VIM-206ENST00000487938 GABPAQ06546 454 aa19.94■□□□□ 0.78
VIM-206ENST00000487938 MAN2A1Q16706 1144 aa19.94■□□□□ 0.78
VIM-206ENST00000487938 EXOC4Q96A65 974 aa19.94■□□□□ 0.78
VIM-206ENST00000487938 GDAP1L1Q96MZ0 367 aa19.94■□□□□ 0.78
VIM-206ENST00000487938 hCG_1984214I3L0E3 225 aa19.93■□□□□ 0.78
VIM-206ENST00000487938 MARCH6O60337 910 aa19.93■□□□□ 0.78
VIM-206ENST00000487938 ZNF713Q8N859 430 aaPredicted RBP19.93■□□□□ 0.78
VIM-206ENST00000487938 IFIH1Q9BYX4 1025 aaKnown RBP19.93■□□□□ 0.78
VIM-206ENST00000487938 DEF6Q9H4E7 631 aa19.93■□□□□ 0.78
VIM-206ENST00000487938 RIC8AQ9NPQ8 531 aa19.93■□□□□ 0.78
VIM-206ENST00000487938 PNMA6FA0A0J9YX94 578 aa19.93■□□□□ 0.78
VIM-206ENST00000487938 LRRC53A6NM62 1247 aa19.93■□□□□ 0.78
VIM-206ENST00000487938 MOCS3O95396 460 aa19.93■□□□□ 0.78
VIM-206ENST00000487938 SNHG28P0DPA3 235 aa19.93■□□□□ 0.78
VIM-206ENST00000487938 TNNT3P45378 269 aaPredicted RBP19.93■□□□□ 0.78
VIM-206ENST00000487938 KIF11P52732 1056 aa19.93■□□□□ 0.78
VIM-206ENST00000487938 C2orf54Q08AI8 447 aa19.93■□□□□ 0.78
VIM-206ENST00000487938 KCTD1Q719H9 257 aa19.93■□□□□ 0.78
VIM-206ENST00000487938 HAS1Q92839 578 aa19.93■□□□□ 0.78
VIM-206ENST00000487938 TANGO6Q9C0B7 1094 aa19.93■□□□□ 0.78
VIM-206ENST00000487938 TBC1D7Q9P0N9 293 aa19.93■□□□□ 0.78
VIM-206ENST00000487938 DDX25Q9UHL0 483 aaKnown RBP19.93■□□□□ 0.78
VIM-206ENST00000487938 CAPN6Q9Y6Q1 641 aa19.93■□□□□ 0.78
VIM-206ENST00000487938 TTLL1O95922 423 aa19.92■□□□□ 0.78
VIM-206ENST00000487938 SSBP05455 408 aaKnown RBP eCLIP19.92■□□□□ 0.78
VIM-206ENST00000487938 CKAP4Q07065 602 aaKnown RBP19.92■□□□□ 0.78
VIM-206ENST00000487938 ZNF543Q08ER8 600 aa19.92■□□□□ 0.78
VIM-206ENST00000487938 PODXL2Q9NZ53 605 aa19.92■□□□□ 0.78
VIM-206ENST00000487938 IGKV6D-41A0A0C4DH26 115 aa19.92■□□□□ 0.78
VIM-206ENST00000487938 USP17L10C9JJH3 530 aa19.92■□□□□ 0.78
VIM-206ENST00000487938 MPHOSPH10O00566 681 aaKnown RBP19.92■□□□□ 0.78
VIM-206ENST00000487938 AKR1B10O60218 316 aa19.92■□□□□ 0.78
VIM-206ENST00000487938 USO1O60763 962 aaKnown RBP19.92■□□□□ 0.78
VIM-206ENST00000487938 HNRNPH3P31942 346 aaKnown RBP19.92■□□□□ 0.78
VIM-206ENST00000487938 SCNN1DP51172 638 aa19.92■□□□□ 0.78
VIM-206ENST00000487938 TMEM119Q4V9L6 283 aa19.92■□□□□ 0.78
VIM-206ENST00000487938 LRRC55Q6ZSA7 311 aa19.92■□□□□ 0.78
VIM-206ENST00000487938 GSPT2Q8IYD1 628 aaKnown RBP19.92■□□□□ 0.78
VIM-206ENST00000487938 MSL3Q8N5Y2 521 aaKnown RBP19.92■□□□□ 0.78
VIM-206ENST00000487938 TRERF1Q96PN7 1200 aa19.92■□□□□ 0.78
VIM-206ENST00000487938 TSGA10Q9BZW7 698 aa19.92■□□□□ 0.78
VIM-206ENST00000487938 ANO9A1A5B4 782 aa19.91■□□□□ 0.78
VIM-206ENST00000487938 FGFR1OPO95684 399 aaKnown RBP19.91■□□□□ 0.78
VIM-206ENST00000487938 LRRC63Q05C16 580 aa19.91■□□□□ 0.78
VIM-206ENST00000487938 HSP90B2PQ58FF3 399 aa19.91■□□□□ 0.78
VIM-206ENST00000487938 USP40Q9NVE5 1235 aa19.91■□□□□ 0.78
VIM-206ENST00000487938 RAD21O60216 631 aa19.91■□□□□ 0.78
VIM-206ENST00000487938 CCDC84Q86UT8 332 aaPredicted RBP19.91■□□□□ 0.78
VIM-206ENST00000487938 CERS5Q8N5B7 392 aa19.91■□□□□ 0.78
VIM-206ENST00000487938 ANKRD13CQ8N6S4 541 aa19.91■□□□□ 0.78
VIM-206ENST00000487938 SH2D4AQ9H788 454 aa19.91■□□□□ 0.78
VIM-206ENST00000487938 SERPINB13Q9UIV8 391 aa19.91■□□□□ 0.78
VIM-206ENST00000487938 TRPC5Q9UL62 973 aaPredicted RBP19.91■□□□□ 0.78
VIM-206ENST00000487938 PCDHA12Q9UN75 941 aa19.91■□□□□ 0.78
VIM-206ENST00000487938 TACC1O75410 805 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 EHHADHQ08426 723 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 COASYQ13057 564 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 PPP4R3AQ6IN85 833 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 MYOCDQ8IZQ8 938 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 CUL5Q93034 780 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 DNAJC19Q96DA6 116 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 RPGRIP1Q96KN7 1286 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 PSMB7Q99436 277 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 TSG101Q99816 390 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 FGFBP2Q9BYJ0 223 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 PSD3Q9NYI0 1048 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 TRAF5O00463 557 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 MYBL2P10244 700 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 CLK2P49760 499 aaKnown RBP19.9■□□□□ 0.78
VIM-206ENST00000487938 CACNB1Q02641 598 aaPredicted RBP19.9■□□□□ 0.78
VIM-206ENST00000487938 KCNMA1Q12791 1236 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 PSMD2Q13200 908 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 ZSCAN26Q16670 478 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 CACNA2D4Q7Z3S7 1137 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 CREG2Q8IUH2 290 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 TRIM58Q8NG06 486 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 COG1Q8WTW3 980 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 BAP1Q92560 729 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 IQCDQ96DY2 449 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms