RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 RPUSD2Q8IZ73 545 aaKnown RBP28.5■■■□□ 2.15
LIME1-206ENST00000487026 IGDCC4Q8TDY8 1250 aa28.5■■■□□ 2.15
LIME1-206ENST00000487026 PIBF1Q8WXW3 757 aa28.5■■■□□ 2.15
LIME1-206ENST00000487026 GHRHRQ02643 423 aa28.49■■■□□ 2.15
LIME1-206ENST00000487026 DEFB128Q7Z7B8 93 aa28.49■■■□□ 2.15
LIME1-206ENST00000487026 ZFP91Q96JP5 570 aaPredicted RBP28.49■■■□□ 2.15
LIME1-206ENST00000487026 MRVI1Q9Y6F6 885 aa28.49■■■□□ 2.15
LIME1-206ENST00000487026 CATIPQ7Z7H3 387 aa28.48■■■□□ 2.15
LIME1-206ENST00000487026 PDCD2LQ9BRP1 358 aa28.48■■■□□ 2.15
LIME1-206ENST00000487026 MTIF3Q9H2K0 278 aaKnown RBP28.48■■■□□ 2.15
LIME1-206ENST00000487026 KIAA1217Q5T5P2 1943 aa28.47■■■□□ 2.15
LIME1-206ENST00000487026 SORBS3O60504 671 aa28.47■■■□□ 2.15
LIME1-206ENST00000487026 RGS20O76081 388 aa28.47■■■□□ 2.15
LIME1-206ENST00000487026 PTPN11Q06124 597 aaPredicted RBP28.47■■■□□ 2.15
LIME1-206ENST00000487026 IL31RAQ8NI17 732 aa28.47■■■□□ 2.15
LIME1-206ENST00000487026 KAT2BQ92831 832 aa28.47■■■□□ 2.15
LIME1-206ENST00000487026 MAP3K20Q9NYL2 800 aaKnown RBP28.47■■■□□ 2.15
LIME1-206ENST00000487026 PNMA6FA0A0J9YX94 578 aa28.46■■■□□ 2.15
LIME1-206ENST00000487026 ZBBXA8MT70 800 aa28.46■■■□□ 2.15
LIME1-206ENST00000487026 GCOM1H8Y6P7 765 aaPredicted RBP28.46■■■□□ 2.15
LIME1-206ENST00000487026 POLR2MP0CAP2 368 aa28.46■■■□□ 2.15
LIME1-206ENST00000487026 CASTP20810 708 aaKnown RBP28.46■■■□□ 2.15
LIME1-206ENST00000487026 PGM5Q15124 567 aa28.46■■■□□ 2.15
LIME1-206ENST00000487026 FCHSD1Q86WN1 690 aa28.46■■■□□ 2.15
LIME1-206ENST00000487026 SKAP1Q86WV1 359 aa28.46■■■□□ 2.15
LIME1-206ENST00000487026 MYL10Q9BUA6 226 aa28.46■■■□□ 2.15
LIME1-206ENST00000487026 LSG1Q9H089 658 aaKnown RBP28.46■■■□□ 2.15
LIME1-206ENST00000487026 MSRAQ9UJ68 235 aa28.46■■■□□ 2.15
LIME1-206ENST00000487026 NOD1Q9Y239 953 aa28.46■■■□□ 2.15
LIME1-206ENST00000487026 RABGGTBP53611 331 aa28.45■■■□□ 2.14
LIME1-206ENST00000487026 COL9A3Q14050 684 aaPredicted RBP28.45■■■□□ 2.14
LIME1-206ENST00000487026 PTGISQ16647 500 aa28.45■■■□□ 2.14
LIME1-206ENST00000487026 VSIG10LQ86VR7 867 aa28.45■■■□□ 2.14
LIME1-206ENST00000487026 NKX2-4Q9H2Z4 354 aa28.45■■■□□ 2.14
LIME1-206ENST00000487026 LY9Q9HBG7 655 aa28.45■■■□□ 2.14
LIME1-206ENST00000487026 SLC4A7Q9Y6M7 1214 aa28.45■■■□□ 2.14
LIME1-206ENST00000487026 LAMC2Q13753 1193 aa28.44■■■□□ 2.14
LIME1-206ENST00000487026 DGKDQ16760 1214 aa28.44■■■□□ 2.14
LIME1-206ENST00000487026 DHX37Q8IY37 1157 aaKnown RBP28.44■■■□□ 2.14
LIME1-206ENST00000487026 RETREG2Q8NC44 543 aa28.44■■■□□ 2.14
LIME1-206ENST00000487026 YBX2Q9Y2T7 364 aaKnown RBP28.44■■■□□ 2.14
LIME1-206ENST00000487026 SCN5AQ14524 2016 aa28.43■■■□□ 2.14
LIME1-206ENST00000487026 CUL9Q8IWT3 2517 aa28.43■■■□□ 2.14
LIME1-206ENST00000487026 PRUNE2Q8WUY3 3088 aa28.43■■■□□ 2.14
LIME1-206ENST00000487026 PRC1O43663 620 aa28.43■■■□□ 2.14
LIME1-206ENST00000487026 IQCF3P0C7M6 154 aa28.43■■■□□ 2.14
LIME1-206ENST00000487026 TRAF1Q13077 416 aa28.43■■■□□ 2.14
LIME1-206ENST00000487026 RAB30Q15771 203 aa28.43■■■□□ 2.14
LIME1-206ENST00000487026 GDF6Q6KF10 455 aaPredicted RBP28.43■■■□□ 2.14
LIME1-206ENST00000487026 ZNF654Q8IZM8 581 aa28.43■■■□□ 2.14
LIME1-206ENST00000487026 SAMD3Q8N6K7 520 aa28.43■■■□□ 2.14
LIME1-206ENST00000487026 EMID1Q96A84 441 aaPredicted RBP28.43■■■□□ 2.14
LIME1-206ENST00000487026 ESYT1Q9BSJ8 1104 aa28.43■■■□□ 2.14
LIME1-206ENST00000487026 PRDM12Q9H4Q4 367 aa28.43■■■□□ 2.14
LIME1-206ENST00000487026 CHD9Q3L8U1 2897 aa28.43■■■□□ 2.14
LIME1-206ENST00000487026 SP2Q02086 613 aa28.42■■■□□ 2.14
LIME1-206ENST00000487026 CASC1Q6TDU7 716 aa28.42■■■□□ 2.14
LIME1-206ENST00000487026 GPKOWQ92917 476 aaPredicted RBP eCLIP28.42■■■□□ 2.14
LIME1-206ENST00000487026 CTAGE1Q96RT6 745 aa28.42■■■□□ 2.14
LIME1-206ENST00000487026 ALG1Q9BT22 464 aa28.42■■■□□ 2.14
LIME1-206ENST00000487026 PITPNM1O00562 1244 aa28.41■■■□□ 2.14
LIME1-206ENST00000487026 SLC27A2O14975 620 aa28.41■■■□□ 2.14
LIME1-206ENST00000487026 ZNF286BP0CG31 522 aa28.41■■■□□ 2.14
LIME1-206ENST00000487026 MYOGP15173 224 aa28.41■■■□□ 2.14
LIME1-206ENST00000487026 PSEN2P49810 448 aa28.41■■■□□ 2.14
LIME1-206ENST00000487026 BFSP2Q13515 415 aa28.41■■■□□ 2.14
LIME1-206ENST00000487026 MYSM1Q5VVJ2 828 aa28.41■■■□□ 2.14
LIME1-206ENST00000487026 PPTC7Q8NI37 304 aa28.41■■■□□ 2.14
LIME1-206ENST00000487026 HDAC6Q9UBN7 1215 aa28.41■■■□□ 2.14
LIME1-206ENST00000487026 MYH7BA7E2Y1 1941 aa28.4■■■□□ 2.14
LIME1-206ENST00000487026 PFKMP08237 780 aa28.4■■■□□ 2.14
LIME1-206ENST00000487026 CCND2P30279 289 aa28.4■■■□□ 2.14
LIME1-206ENST00000487026 NFXL1Q6ZNB6 911 aa28.4■■■□□ 2.14
LIME1-206ENST00000487026 CTCFLQ8NI51 663 aaPredicted RBP28.4■■■□□ 2.14
LIME1-206ENST00000487026 COL25A1Q9BXS0 654 aaPredicted RBP28.4■■■□□ 2.14
LIME1-206ENST00000487026 FTOQ9C0B1 505 aaKnown RBP eCLIP28.4■■■□□ 2.14
LIME1-206ENST00000487026 GGPS1O95749 300 aa28.39■■■□□ 2.14
LIME1-206ENST00000487026 ATP2A2P16615 1042 aaKnown RBP28.39■■■□□ 2.14
LIME1-206ENST00000487026 MCM5P33992 734 aa28.39■■■□□ 2.14
LIME1-206ENST00000487026 CELF3Q5SZQ8 465 aaKnown RBP28.39■■■□□ 2.14
LIME1-206ENST00000487026 CREB3L3Q68CJ9 461 aa28.39■■■□□ 2.14
LIME1-206ENST00000487026 SESTD1Q86VW0 696 aa28.39■■■□□ 2.14
LIME1-206ENST00000487026 C7orf31Q8N865 590 aa28.39■■■□□ 2.14
LIME1-206ENST00000487026 USP38Q8NB14 1042 aa28.39■■■□□ 2.14
LIME1-206ENST00000487026 SPATA33Q96N06 139 aa28.39■■■□□ 2.14
LIME1-206ENST00000487026 MAP3K14Q99558 947 aa28.39■■■□□ 2.14
LIME1-206ENST00000487026 BCAS3Q9H6U6 928 aa28.39■■■□□ 2.14
LIME1-206ENST00000487026 SLC28A3Q9HAS3 691 aa28.39■■■□□ 2.14
LIME1-206ENST00000487026 GBF1Q92538 1859 aa28.38■■■□□ 2.13
LIME1-206ENST00000487026 RBAK-RBAKDNI3L0D1 243 aa28.38■■■□□ 2.13
LIME1-206ENST00000487026 SH2B2O14492 632 aaPredicted RBP28.38■■■□□ 2.13
LIME1-206ENST00000487026 DDAH1O94760 285 aa28.38■■■□□ 2.13
LIME1-206ENST00000487026 RXRAP19793 462 aa28.38■■■□□ 2.13
LIME1-206ENST00000487026 RFC2P35250 354 aa28.38■■■□□ 2.13
LIME1-206ENST00000487026 MFSD10Q14728 455 aa28.38■■■□□ 2.13
LIME1-206ENST00000487026 KIAA0753Q2KHM9 967 aa28.38■■■□□ 2.13
LIME1-206ENST00000487026 HSDL1Q3SXM5 330 aa28.38■■■□□ 2.13
LIME1-206ENST00000487026 KCNV1Q6PIU1 500 aa28.38■■■□□ 2.13
LIME1-206ENST00000487026 RAB11FIP4Q86YS3 637 aa28.38■■■□□ 2.13
LIME1-206ENST00000487026 CMTR1Q8N1G2 835 aaKnown RBP28.38■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms