RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 ROBO2Q9HCK4 1378 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 C10orf76Q5T2E6 689 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 NIM1KQ8IY84 436 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 CCDC17Q96LX7 622 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 SPZ1Q9BXG8 430 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 SEC31BQ9NQW1 1179 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 GPHNQ9NQX3 736 aaPredicted RBP17.9■□□□□ 0.46
COL7A1-210ENST00000487017 LEMD3Q9Y2U8 911 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 MYO1FO00160 1098 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 TTLL1O95922 423 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 FTCDO95954 541 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 CDC25AP30304 524 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 KMT5BQ4FZB7 885 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 KAZNQ674X7 775 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 SMCR8Q8TEV9 937 aaPredicted RBP17.9■□□□□ 0.46
COL7A1-210ENST00000487017 ABCB6Q9NP58 842 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 LOC102724428A0A0B4J2F2 783 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 SERPING1P05155 500 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 PNMA6AP0CW24 399 aaPredicted RBP17.9■□□□□ 0.46
COL7A1-210ENST00000487017 SIK1P57059 783 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 KRT31Q15323 416 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 AS3MTQ9HBK9 375 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 IFNAR2P48551 515 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 PSMD2Q13200 908 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 SLC17A8Q8NDX2 589 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 PIGSQ96S52 555 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 MIS12Q9H081 205 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 ABCB5Q2M3G0 1257 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 ALS2CLQ60I27 953 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 ARL6IP4Q66PJ3 421 aaKnown RBP17.9■□□□□ 0.46
COL7A1-210ENST00000487017 PGBD1Q96JS3 809 aa17.9■□□□□ 0.46
COL7A1-210ENST00000487017 PIH1D3Q9NQM4 214 aaKnown RBP17.9■□□□□ 0.46
COL7A1-210ENST00000487017 PRR36Q9H6K5 1346 aa17.89■□□□□ 0.46
COL7A1-210ENST00000487017 PIK3CAP42336 1068 aa17.89■□□□□ 0.46
COL7A1-210ENST00000487017 NNTQ13423 1086 aa17.89■□□□□ 0.46
COL7A1-210ENST00000487017 SEPT2Q15019 361 aa17.89■□□□□ 0.46
COL7A1-210ENST00000487017 USPL1Q5W0Q7 1092 aa17.89■□□□□ 0.46
COL7A1-210ENST00000487017 MB21D1Q8N884 522 aa17.89■□□□□ 0.46
COL7A1-210ENST00000487017 POMGNT1Q8WZA1 660 aa17.89■□□□□ 0.46
COL7A1-210ENST00000487017 ATP8A1Q9Y2Q0 1164 aa17.89■□□□□ 0.46
COL7A1-210ENST00000487017 PLCG1P19174 1290 aa17.89■□□□□ 0.45
COL7A1-210ENST00000487017 NLRP10Q86W26 655 aa17.89■□□□□ 0.45
COL7A1-210ENST00000487017 TRIM50Q86XT4 487 aa17.89■□□□□ 0.45
COL7A1-210ENST00000487017 KIAA0825Q8IV33 1275 aa17.89■□□□□ 0.45
COL7A1-210ENST00000487017 CACNB1Q02641 598 aaPredicted RBP17.89■□□□□ 0.45
COL7A1-210ENST00000487017 TRIM11Q96F44 468 aa17.89■□□□□ 0.45
COL7A1-210ENST00000487017 HEG1Q9ULI3 1381 aa17.89■□□□□ 0.45
COL7A1-210ENST00000487017 KIF11P52732 1056 aa17.89■□□□□ 0.45
COL7A1-210ENST00000487017 DOK7Q18PE1 504 aa17.89■□□□□ 0.45
COL7A1-210ENST00000487017 BPIFA3Q9BQP9 254 aa17.89■□□□□ 0.45
COL7A1-210ENST00000487017 MLXIPQ9HAP2 919 aa17.89■□□□□ 0.45
COL7A1-210ENST00000487017 PNMA2Q9UL42 364 aa17.89■□□□□ 0.45
COL7A1-210ENST00000487017 TRPM1Q7Z4N2 1603 aa17.89■□□□□ 0.45
COL7A1-210ENST00000487017 A0A087WUV0 522 aaPredicted RBP17.89■□□□□ 0.45
COL7A1-210ENST00000487017 RFC1P35251 1148 aaPredicted RBP17.89■□□□□ 0.45
COL7A1-210ENST00000487017 PLTPP55058 493 aa17.89■□□□□ 0.45
COL7A1-210ENST00000487017 WHAMMQ8TF30 809 aa17.88■□□□□ 0.45
COL7A1-210ENST00000487017 ZNF653Q96CK0 615 aa17.88■□□□□ 0.45
COL7A1-210ENST00000487017 TNFAIP1Q13829 316 aa17.88■□□□□ 0.45
COL7A1-210ENST00000487017 STAG1Q8WVM7 1258 aa17.88■□□□□ 0.45
COL7A1-210ENST00000487017 NDST4Q9H3R1 872 aa17.88■□□□□ 0.45
COL7A1-210ENST00000487017 TCP10L2B9ZVM9 353 aa17.88■□□□□ 0.45
COL7A1-210ENST00000487017 POC1B-GALNT4F8VUJ3 575 aa17.88■□□□□ 0.45
COL7A1-210ENST00000487017 LUC7L3O95232 432 aaKnown RBP17.88■□□□□ 0.45
COL7A1-210ENST00000487017 MAP7Q14244 749 aa17.88■□□□□ 0.45
COL7A1-210ENST00000487017 CLEC17AQ6ZS10 378 aa17.88■□□□□ 0.45
COL7A1-210ENST00000487017 ARMC9Q7Z3E5 817 aa17.88■□□□□ 0.45
COL7A1-210ENST00000487017 RNF8O76064 485 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 TMEM191BP0C7N4 346 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 DHX9Q08211 1270 aaKnown RBP17.87■□□□□ 0.45
COL7A1-210ENST00000487017 METTL13Q8N6R0 699 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 HAUS2Q9NVX0 235 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 RIOK1Q9BRS2 568 aaKnown RBP17.87■□□□□ 0.45
COL7A1-210ENST00000487017 GOLPH3LQ9H4A5 285 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 CNOT10Q9H9A5 744 aaKnown RBP17.87■□□□□ 0.45
COL7A1-210ENST00000487017 CCPG1Q9ULG6 757 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 PLA2R1Q13018 1463 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 ECEL1O95672 775 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 EFCC1Q9HA90 598 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 EMILIN3Q9NT22 766 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 GCNT4Q9P109 453 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 BAG2O95816 211 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 HSPA6P17066 643 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 MAPK4P31152 587 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 GCKP35557 465 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 POLGP54098 1239 aaPredicted RBP17.87■□□□□ 0.45
COL7A1-210ENST00000487017 CYP27A1Q02318 531 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 CFAP61Q8NHU2 1237 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 MYCBPQ99417 103 aaPredicted RBP17.87■□□□□ 0.45
COL7A1-210ENST00000487017 DISC1Q9NRI5 854 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 USH1CQ9Y6N9 552 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 TARBP1Q13395 1621 aaKnown RBP17.87■□□□□ 0.45
COL7A1-210ENST00000487017 CUL4BQ13620 913 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 TOGARAM2Q6ZUX3 1019 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 KCTD1Q719H9 257 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 ZNF577Q9BSK1 485 aa17.87■□□□□ 0.45
COL7A1-210ENST00000487017 EIF3CLB5ME19 914 aaKnown RBP17.86■□□□□ 0.45
COL7A1-210ENST00000487017 H7C1W4 665 aa17.86■□□□□ 0.45
COL7A1-210ENST00000487017 LRRC63Q05C16 580 aa17.86■□□□□ 0.45
COL7A1-210ENST00000487017 SGO2Q562F6 1265 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms