RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 ZNF16P17020 682 aaPredicted RBP8.11□□□□□ -1.11
HDAC3-209ENST00000486618 IBSPP21815 317 aaPredicted RBP8.11□□□□□ -1.11
HDAC3-209ENST00000486618 ADCYAP1R1P41586 468 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 G3BP1Q13283 466 aaKnown RBP eCLIP8.11□□□□□ -1.11
HDAC3-209ENST00000486618 NCOA4Q13772 614 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 SNX17Q15036 470 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 ZYXQ15942 572 aaKnown RBP8.11□□□□□ -1.11
HDAC3-209ENST00000486618 TRIM60Q495X7 471 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 CCDC158Q5M9N0 1113 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 C1orf53Q5VUE5 145 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 LYPD4Q6UWN0 246 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 NPLOC4Q8TAT6 608 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 PMM1Q92871 262 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 TRIM44Q96DX7 344 aaPredicted RBP8.11□□□□□ -1.11
HDAC3-209ENST00000486618 RNPC3Q96LT9 517 aaKnown RBP8.11□□□□□ -1.11
HDAC3-209ENST00000486618 KIAA1683Q9H0B3 1180 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 CABP5Q9NP86 173 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 PDLIM7Q9NR12 457 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 HOXC10Q9NYD6 342 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 SERTAD1Q9UHV2 236 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 PCDHGA11Q9Y5H2 935 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 SMCHD1A6NHR9 2005 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 CDK5RAP2Q96SN8 1893 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 MYH1P12882 1939 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 GOLIM4O00461 696 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 PARNO95453 639 aaKnown RBP8.1□□□□□ -1.11
HDAC3-209ENST00000486618 VCAM1P19320 739 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 MSX1P28360 303 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 ADORA2AP29274 412 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 MCAMP43121 646 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 PLA2G4AP47712 749 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 SMTNP53814 917 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 TLE2Q04725 743 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 MTX1Q13505 466 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 RAB3GAP1Q15042 981 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 SHROOM1Q2M3G4 852 aaPredicted RBP8.1□□□□□ -1.11
HDAC3-209ENST00000486618 TTC39AQ5SRH9 613 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 TATDN1Q6P1N9 297 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 TTC6Q86TZ1 520 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 SHCBP1Q8NEM2 672 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 TRPV1Q8NER1 839 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 PBXIP1Q96AQ6 731 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 BTBD7Q9P203 1132 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 SAP30BPQ9UHR5 308 aaKnown RBP8.1□□□□□ -1.11
HDAC3-209ENST00000486618 NOB1Q9ULX3 412 aaKnown RBP8.1□□□□□ -1.11
HDAC3-209ENST00000486618 FOCADQ5VW36 1801 aa8.1□□□□□ -1.11
HDAC3-209ENST00000486618 ZNFX1Q9P2E3 1918 aaKnown RBP8.09□□□□□ -1.11
HDAC3-209ENST00000486618 TRIM43BA6NCK2 446 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 LZTS3O60299 673 aaPredicted RBP8.09□□□□□ -1.11
HDAC3-209ENST00000486618 KIF4AO95239 1232 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 IGHA2P01877 340 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 CELA2BP08218 269 aaPredicted RBP8.09□□□□□ -1.11
HDAC3-209ENST00000486618 CLTBP09497 229 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 CT47B1P0C2W7 299 aaPredicted RBP8.09□□□□□ -1.11
HDAC3-209ENST00000486618 RAG1P15918 1043 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 USP5P45974 858 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 FPGSQ05932 587 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 SLFN5Q08AF3 891 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 UBAP2LQ14157 1087 aaKnown RBP8.09□□□□□ -1.11
HDAC3-209ENST00000486618 COG2Q14746 738 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 LRRC41Q15345 812 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 ABCB5Q2M3G0 1257 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 CERKLQ49MI3 558 aaPredicted RBP8.09□□□□□ -1.11
HDAC3-209ENST00000486618 ANO1Q5XXA6 986 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 RNF180Q86T96 592 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 DEPDC4Q8N2C3 294 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 ATXN2LQ8WWM7 1075 aaKnown RBP8.09□□□□□ -1.11
HDAC3-209ENST00000486618 FERMT2Q96AC1 680 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 VTI1AQ96AJ9 217 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 TRIM43Q96BQ3 446 aaPredicted RBP8.09□□□□□ -1.11
HDAC3-209ENST00000486618 UCN2Q96RP3 112 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 MEIS3Q99687 375 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 MOV10L1Q9BXT6 1211 aaKnown RBP8.09□□□□□ -1.11
HDAC3-209ENST00000486618 EHD4Q9H223 541 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 RPAP3Q9H6T3 665 aaPredicted RBP8.09□□□□□ -1.11
HDAC3-209ENST00000486618 RUBCNLQ9H714 662 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 SERPINB13Q9UIV8 391 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 NOD1Q9Y239 953 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 FAN1Q9Y2M0 1017 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 NUB1Q9Y5A7 615 aa8.09□□□□□ -1.11
HDAC3-209ENST00000486618 DNAH12Q6ZR08 3092 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 KIAA0355O15063 1070 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 RARBP10826 455 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 MX2P20592 715 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 CYP7A1P22680 504 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 GSK3AP49840 483 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 KCNMA1Q12791 1236 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 LBRQ14739 615 aaKnown RBP8.08□□□□□ -1.12
HDAC3-209ENST00000486618 GRIN2CQ14957 1233 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 SETDB1Q15047 1291 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 PTPROQ16827 1216 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 CCDC174Q6PII3 467 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 ZNF295-AS1Q8N0V1 137 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 ABRAQ8N0Z2 381 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 PGBD3Q8N328 593 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 MB21D1Q8N884 522 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 ACER1Q8TDN7 264 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 SPATC1LQ9H0A9 340 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 MROH8Q9H579 483 aa8.08□□□□□ -1.12
HDAC3-209ENST00000486618 ZNF576Q9H609 170 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms