RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 SCFD2Q8WU76 684 aa8.13□□□□□ -1.11
VPS50-218ENST00000485994 FERMT2Q96AC1 680 aa8.13□□□□□ -1.11
VPS50-218ENST00000485994 PURBQ96QR8 312 aaKnown RBP8.13□□□□□ -1.11
VPS50-218ENST00000485994 WDR11Q9BZH6 1224 aa8.13□□□□□ -1.11
VPS50-218ENST00000485994 CPVLQ9H3G5 476 aa8.13□□□□□ -1.11
VPS50-218ENST00000485994 SENP2Q9HC62 589 aa8.13□□□□□ -1.11
VPS50-218ENST00000485994 VAT1LQ9HCJ6 419 aa8.13□□□□□ -1.11
VPS50-218ENST00000485994 ANO2Q9NQ90 1003 aa8.13□□□□□ -1.11
VPS50-218ENST00000485994 MYH7BA7E2Y1 1941 aa8.13□□□□□ -1.11
VPS50-218ENST00000485994 SCN10AQ9Y5Y9 1956 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 A0A0U1RQG5 324 aaPredicted RBP8.12□□□□□ -1.11
VPS50-218ENST00000485994 TRIM43BA6NCK2 446 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 MYADML2A6NDP7 307 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 A6NJR5 290 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 OPLAHO14841 1288 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 PPP1R11O60927 126 aaPredicted RBP8.12□□□□□ -1.11
VPS50-218ENST00000485994 EIF3JO75822 258 aaKnown RBP8.12□□□□□ -1.11
VPS50-218ENST00000485994 CD4P01730 458 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 NR3C2P08235 984 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 CLTBP09497 229 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 TGFB3P10600 412 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 SYN1P17600 705 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 CALML3P27482 149 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 RCAN1P53805 252 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 PDE4DQ08499 809 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 FAAP100Q0VG06 881 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 STXBP2Q15833 593 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 USH1GQ495M9 461 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 TRIM60Q495X7 471 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 KCNV1Q6PIU1 500 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 DHX32Q7L7V1 743 aaKnown RBP8.12□□□□□ -1.11
VPS50-218ENST00000485994 CHST3Q7LGC8 479 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 TLK2Q86UE8 772 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 FBXO16Q8IX29 292 aaPredicted RBP8.12□□□□□ -1.11
VPS50-218ENST00000485994 TDHQ8IZJ6 230 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 ZNF654Q8IZM8 581 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 CTCFLQ8NI51 663 aaPredicted RBP8.12□□□□□ -1.11
VPS50-218ENST00000485994 TRIM43Q96BQ3 446 aaPredicted RBP8.12□□□□□ -1.11
VPS50-218ENST00000485994 NEK1Q96PY6 1258 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 TAAR1Q96RJ0 339 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 PIGSQ96S52 555 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 RMDN3Q96TC7 470 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 LBHD1Q9BQE6 289 aaPredicted RBP8.12□□□□□ -1.11
VPS50-218ENST00000485994 UBE2OQ9C0C9 1292 aaKnown RBP8.12□□□□□ -1.11
VPS50-218ENST00000485994 PDLIM7Q9NR12 457 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 POLR3EQ9NVU0 708 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 ATP11BQ9Y2G3 1177 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 SZT2Q5T011 3432 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 MYO9BQ13459 2157 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 LAMA3Q16787 3333 aa8.12□□□□□ -1.11
VPS50-218ENST00000485994 CCDC69A6NI79 296 aa8.11□□□□□ -1.11
VPS50-218ENST00000485994 PIK3CDO00329 1044 aa8.11□□□□□ -1.11
VPS50-218ENST00000485994 DHX16O60231 1041 aaKnown RBP8.11□□□□□ -1.11
VPS50-218ENST00000485994 CPT1AP50416 773 aa8.11□□□□□ -1.11
VPS50-218ENST00000485994 TTLL4Q14679 1199 aa8.11□□□□□ -1.11
VPS50-218ENST00000485994 FSCN1Q16658 493 aaKnown RBP8.11□□□□□ -1.11
VPS50-218ENST00000485994 BRDTQ58F21 947 aaPredicted RBP8.11□□□□□ -1.11
VPS50-218ENST00000485994 ARHGEF16Q5VV41 709 aa8.11□□□□□ -1.11
VPS50-218ENST00000485994 XRRA1Q6P2D8 792 aa8.11□□□□□ -1.11
VPS50-218ENST00000485994 NOL8Q76FK4 1167 aaKnown RBP8.11□□□□□ -1.11
VPS50-218ENST00000485994 EEPD1Q7L9B9 569 aa8.11□□□□□ -1.11
VPS50-218ENST00000485994 VSIG10LQ86VR7 867 aa8.11□□□□□ -1.11
VPS50-218ENST00000485994 FANCBQ8NB91 859 aa8.11□□□□□ -1.11
VPS50-218ENST00000485994 PTCD2Q8WV60 388 aaKnown RBP8.11□□□□□ -1.11
VPS50-218ENST00000485994 EMID1Q96A84 441 aaPredicted RBP8.11□□□□□ -1.11
VPS50-218ENST00000485994 LENG1Q96BZ8 264 aaPredicted RBP8.11□□□□□ -1.11
VPS50-218ENST00000485994 IRX2Q9BZI1 471 aaPredicted RBP8.11□□□□□ -1.11
VPS50-218ENST00000485994 PXMP2Q9NR77 195 aa8.11□□□□□ -1.11
VPS50-218ENST00000485994 PPP4R2Q9NY27 417 aa8.11□□□□□ -1.11
VPS50-218ENST00000485994 COL20A1Q9P218 1284 aa8.11□□□□□ -1.11
VPS50-218ENST00000485994 TBX21Q9UL17 535 aa8.11□□□□□ -1.11
VPS50-218ENST00000485994 LRRC37A2A6NM11 1700 aa8.11□□□□□ -1.11
VPS50-218ENST00000485994 GRIN2DO15399 1336 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 GCOM1H8Y6P7 765 aaPredicted RBP8.1□□□□□ -1.11
VPS50-218ENST00000485994 TLR3O15455 904 aaKnown RBP8.1□□□□□ -1.11
VPS50-218ENST00000485994 STAM2O75886 525 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 REC8O95072 547 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 CFBP00751 764 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 TIMP1P01033 207 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 NEFLP07196 543 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 POLR2MP0CAP2 368 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 TXNP10599 105 aaKnown RBP8.1□□□□□ -1.11
VPS50-218ENST00000485994 HSPA4P34932 840 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 PURAQ00577 322 aaKnown RBP8.1□□□□□ -1.11
VPS50-218ENST00000485994 BEX3Q00994 111 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 PTPN11Q06124 597 aaPredicted RBP8.1□□□□□ -1.11
VPS50-218ENST00000485994 ITGA7Q13683 1181 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 TMEM63BQ5T3F8 832 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 FAM109BQ6ICB4 259 aaPredicted RBP8.1□□□□□ -1.11
VPS50-218ENST00000485994 MFSD5Q6N075 450 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 SYNE3Q6ZMZ3 975 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 SH3RF1Q7Z6J0 888 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 FAM126BQ8IXS8 530 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 PLPP6Q8IY26 295 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 SRBD1Q8N5C6 995 aaKnown RBP8.1□□□□□ -1.11
VPS50-218ENST00000485994 VTI1AQ96AJ9 217 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 RRP36Q96EU6 259 aaKnown RBP8.1□□□□□ -1.11
VPS50-218ENST00000485994 PDCD2LQ9BRP1 358 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 AGXT2Q9BYV1 514 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 TMEM39AQ9NV64 488 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms