RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 DCP2Q8IU60 420 aaKnown RBP8.93□□□□□ -0.98
USP40-213ENST00000483216 SH3TC2Q8TF17 1288 aa8.93□□□□□ -0.98
USP40-213ENST00000483216 GCM1Q9NP62 436 aa8.93□□□□□ -0.98
USP40-213ENST00000483216 COA3Q9Y2R0 106 aaPredicted RBP8.93□□□□□ -0.98
USP40-213ENST00000483216 ETV2O00321 342 aaPredicted RBP8.92□□□□□ -0.98
USP40-213ENST00000483216 TSPAN15O95858 294 aa8.92□□□□□ -0.98
USP40-213ENST00000483216 DLG4P78352 724 aa8.92□□□□□ -0.98
USP40-213ENST00000483216 SQSTM1Q13501 440 aa8.92□□□□□ -0.98
USP40-213ENST00000483216 CNTD2Q9H8S5 307 aa8.92□□□□□ -0.98
USP40-213ENST00000483216 TRAF6Q9Y4K3 522 aa8.92□□□□□ -0.98
USP40-213ENST00000483216 HCFC2Q9Y5Z7 792 aa8.92□□□□□ -0.98
USP40-213ENST00000483216 IRS2Q9Y4H2 1338 aa8.91□□□□□ -0.98
USP40-213ENST00000483216 C8AP07357 584 aa8.91□□□□□ -0.98
USP40-213ENST00000483216 NOP9Q86U38 636 aaKnown RBP8.91□□□□□ -0.98
USP40-213ENST00000483216 LDHDQ86WU2 507 aa8.91□□□□□ -0.98
USP40-213ENST00000483216 SEC14L1Q92503 715 aa8.91□□□□□ -0.98
USP40-213ENST00000483216 EPB41L1Q9H4G0 881 aa8.91□□□□□ -0.98
USP40-213ENST00000483216 RXFP1Q9HBX9 757 aa8.91□□□□□ -0.98
USP40-213ENST00000483216 NFIBO00712 420 aa8.9□□□□□ -0.98
USP40-213ENST00000483216 NAT1P18440 290 aa8.9□□□□□ -0.98
USP40-213ENST00000483216 CDR1P51861 262 aa8.9□□□□□ -0.98
USP40-213ENST00000483216 PKN1Q16512 942 aa8.9□□□□□ -0.98
USP40-213ENST00000483216 TRIM61Q5EBN2 209 aa8.9□□□□□ -0.98
USP40-213ENST00000483216 RNPC3Q96LT9 517 aaKnown RBP8.9□□□□□ -0.98
USP40-213ENST00000483216 SGPP1Q9BX95 441 aa8.9□□□□□ -0.98
USP40-213ENST00000483216 MRPL4Q9BYD3 311 aaKnown RBP8.9□□□□□ -0.98
USP40-213ENST00000483216 AP5M1Q9H0R1 490 aa8.9□□□□□ -0.98
USP40-213ENST00000483216 KANSL2Q9H9L4 492 aa8.9□□□□□ -0.98
USP40-213ENST00000483216 TMEM260Q9NX78 707 aa8.9□□□□□ -0.98
USP40-213ENST00000483216 SIT1Q9Y3P8 196 aa8.9□□□□□ -0.98
USP40-213ENST00000483216 N4BP3O15049 544 aa8.89□□□□□ -0.99
USP40-213ENST00000483216 SGSM2O43147 1006 aa8.89□□□□□ -0.99
USP40-213ENST00000483216 EFCAB14O75071 495 aa8.89□□□□□ -0.99
USP40-213ENST00000483216 C1QTNF9P0C862 333 aa8.89□□□□□ -0.99
USP40-213ENST00000483216 GRK2P25098 689 aa8.89□□□□□ -0.99
USP40-213ENST00000483216 GRK3P35626 688 aa8.89□□□□□ -0.99
USP40-213ENST00000483216 ZNF200P98182 395 aaPredicted RBP8.89□□□□□ -0.99
USP40-213ENST00000483216 CHRNA2Q15822 529 aa8.89□□□□□ -0.99
USP40-213ENST00000483216 MZB1Q8WU39 189 aa8.89□□□□□ -0.99
USP40-213ENST00000483216 ALG1Q9BT22 464 aa8.89□□□□□ -0.99
USP40-213ENST00000483216 PPARGC1AQ9UBK2 798 aaKnown RBP8.89□□□□□ -0.99
USP40-213ENST00000483216 PCDHA5Q9Y5H7 936 aa8.89□□□□□ -0.99
USP40-213ENST00000483216 KCNQ2O43526 872 aa8.88□□□□□ -0.99
USP40-213ENST00000483216 DGKIO75912 1065 aa8.88□□□□□ -0.99
USP40-213ENST00000483216 SOD2P04179 222 aa8.88□□□□□ -0.99
USP40-213ENST00000483216 FBLN1P23142 703 aa8.88□□□□□ -0.99
USP40-213ENST00000483216 EMC4Q5J8M3 183 aa8.88□□□□□ -0.99
USP40-213ENST00000483216 ATG14Q6ZNE5 492 aa8.88□□□□□ -0.99
USP40-213ENST00000483216 GSTCDQ8NEC7 633 aa8.88□□□□□ -0.99
USP40-213ENST00000483216 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.88□□□□□ -0.99
USP40-213ENST00000483216 NCOA5Q9HCD5 579 aaKnown RBP8.88□□□□□ -0.99
USP40-213ENST00000483216 CD320Q9NPF0 282 aa8.88□□□□□ -0.99
USP40-213ENST00000483216 FAM47E-STBD1D6RA91 191 aa8.87□□□□□ -0.99
USP40-213ENST00000483216 RAP1GAPP47736 663 aa8.87□□□□□ -0.99
USP40-213ENST00000483216 EPHB3P54753 998 aa8.87□□□□□ -0.99
USP40-213ENST00000483216 TARBP2Q15633 366 aaKnown RBP8.87□□□□□ -0.99
USP40-213ENST00000483216 ALG3Q92685 438 aa8.87□□□□□ -0.99
USP40-213ENST00000483216 JAM3Q9BX67 310 aa8.87□□□□□ -0.99
USP40-213ENST00000483216 RNF38Q9H0F5 515 aa8.87□□□□□ -0.99
USP40-213ENST00000483216 SLC52A2Q9HAB3 445 aa8.87□□□□□ -0.99
USP40-213ENST00000483216 NDOR1Q9UHB4 597 aa8.87□□□□□ -0.99
USP40-213ENST00000483216 ZNF652Q9Y2D9 606 aa8.87□□□□□ -0.99
USP40-213ENST00000483216 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.86□□□□□ -0.99
USP40-213ENST00000483216 TCAF2A6NFQ2 919 aa8.86□□□□□ -0.99
USP40-213ENST00000483216 ARVCFO00192 962 aa8.86□□□□□ -0.99
USP40-213ENST00000483216 PLD2O14939 933 aa8.86□□□□□ -0.99
USP40-213ENST00000483216 HGSO14964 777 aaPredicted RBP8.86□□□□□ -0.99
USP40-213ENST00000483216 TADA3O75528 432 aa8.86□□□□□ -0.99
USP40-213ENST00000483216 GUCY1A3Q02108 690 aa8.86□□□□□ -0.99
USP40-213ENST00000483216 PAK1Q13153 545 aa8.86□□□□□ -0.99
USP40-213ENST00000483216 STEAP3Q658P3 488 aa8.86□□□□□ -0.99
USP40-213ENST00000483216 MTDHQ86UE4 582 aaKnown RBP8.86□□□□□ -0.99
USP40-213ENST00000483216 IGDCC3Q8IVU1 814 aa8.86□□□□□ -0.99
USP40-213ENST00000483216 SFMBT1Q9UHJ3 866 aa8.86□□□□□ -0.99
USP40-213ENST00000483216 PALD1Q9ULE6 856 aa8.86□□□□□ -0.99
USP40-213ENST00000483216 PCDHA8Q9Y5H6 950 aa8.86□□□□□ -0.99
USP40-213ENST00000483216 ESYT3A0FGR9 886 aa8.85□□□□□ -0.99
USP40-213ENST00000483216 IRS4O14654 1257 aaPredicted RBP8.85□□□□□ -0.99
USP40-213ENST00000483216 WNT9AO14904 365 aa8.85□□□□□ -0.99
USP40-213ENST00000483216 NCAM1P13591 858 aa8.85□□□□□ -0.99
USP40-213ENST00000483216 ZNF124Q15973 351 aa8.85□□□□□ -0.99
USP40-213ENST00000483216 FNDC3BQ53EP0 1204 aaKnown RBP8.85□□□□□ -0.99
USP40-213ENST00000483216 CYP4F22Q6NT55 531 aa8.85□□□□□ -0.99
USP40-213ENST00000483216 SYNPOQ8N3V7 929 aa8.85□□□□□ -0.99
USP40-213ENST00000483216 SLC7A14Q8TBB6 771 aa8.85□□□□□ -0.99
USP40-213ENST00000483216 IPPKQ9H8X2 491 aa8.85□□□□□ -0.99
USP40-213ENST00000483216 SLC6A20Q9NP91 592 aa8.85□□□□□ -0.99
USP40-213ENST00000483216 PLA2G2DQ9UNK4 145 aa8.85□□□□□ -0.99
USP40-213ENST00000483216 SMG5Q9UPR3 1016 aaKnown RBP8.85□□□□□ -0.99
USP40-213ENST00000483216 KRIT1O00522 736 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 MAFKO60675 156 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 CRTAMO95727 393 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 ASGR2P07307 311 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 PFKLP17858 780 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 PMLP29590 882 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 NCKAP1LP55160 1127 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 HABP4Q5JVS0 413 aaKnown RBP8.84□□□□□ -0.99
USP40-213ENST00000483216 OTOP3Q7RTS5 596 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 MILR1Q7Z6M3 343 aa8.84□□□□□ -0.99
USP40-213ENST00000483216 JAZF1Q86VZ6 243 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms