RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 OR52Z1P0C646 297 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 ITGB5P18084 799 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 LIG1P18858 919 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 CMA1P23946 247 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 ME1P48163 572 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 UBXN2AP68543 259 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 MRPS9P82933 396 aaKnown RBP9.36□□□□□ -0.91
USP4-210ENST00000483212 NOGQ13253 232 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 PGM5Q15124 567 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 TAF1CQ15572 869 aaPredicted RBP9.36□□□□□ -0.91
USP4-210ENST00000483212 DEFB115Q30KQ5 88 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 RESP18Q5W5W9 173 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 PCNX4Q63HM2 1172 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 C17orf99Q6UX52 265 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 NCAPG2Q86XI2 1143 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 JMYQ8N9B5 988 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 FAM133AQ8N9E0 248 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 ZNF579Q8NAF0 562 aaKnown RBP9.36□□□□□ -0.91
USP4-210ENST00000483212 ENGASEQ8NFI3 743 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 CYP2W1Q8TAV3 490 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 ETNPPLQ8TBG4 499 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 HAS1Q92839 578 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 FERMT2Q96AC1 680 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 CAPNS2Q96L46 248 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 CLIC6Q96NY7 704 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 CSRNP2Q9H175 543 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 EHMT1Q9H9B1 1298 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 EFCC1Q9HA90 598 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 KCNMB3Q9NPA1 279 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 DDX25Q9UHL0 483 aaKnown RBP9.36□□□□□ -0.91
USP4-210ENST00000483212 HPSEQ9Y251 543 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 UBIAD1Q9Y5Z9 338 aa9.36□□□□□ -0.91
USP4-210ENST00000483212 ZNF236Q9UL36 1845 aa9.35□□□□□ -0.91
USP4-210ENST00000483212 MEIS1O00470 390 aa9.35□□□□□ -0.91
USP4-210ENST00000483212 TLR2O60603 784 aa9.35□□□□□ -0.91
USP4-210ENST00000483212 AOC2O75106 756 aa9.35□□□□□ -0.91
USP4-210ENST00000483212 MBD3O95983 291 aa9.35□□□□□ -0.91
USP4-210ENST00000483212 EIF2AK2P19525 551 aaKnown RBP9.35□□□□□ -0.91
USP4-210ENST00000483212 EDNRBP24530 442 aa9.35□□□□□ -0.91
USP4-210ENST00000483212 CNTN2Q02246 1040 aa9.35□□□□□ -0.91
USP4-210ENST00000483212 USP49Q70CQ1 688 aa9.35□□□□□ -0.91
USP4-210ENST00000483212 NIPA1Q7RTP0 329 aa9.35□□□□□ -0.91
USP4-210ENST00000483212 VSIG10LQ86VR7 867 aa9.35□□□□□ -0.91
USP4-210ENST00000483212 RMDN3Q96TC7 470 aa9.35□□□□□ -0.91
USP4-210ENST00000483212 CPA4Q9UI42 421 aa9.35□□□□□ -0.91
USP4-210ENST00000483212 SSUH2Q9Y2M2 353 aa9.35□□□□□ -0.91
USP4-210ENST00000483212 VWA3AA6NCI4 1184 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 TBX3O15119 743 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 MSH4O15457 936 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 CA12O43570 354 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 RGS20O76081 388 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 NR3C2P08235 984 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 PFKFB1P16118 471 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 ALDH5A1P51649 535 aaPredicted RBP9.34□□□□□ -0.91
USP4-210ENST00000483212 NDUFA8P51970 172 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 CCNA1P78396 465 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 SPIRE1Q08AE8 756 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 MMRN1Q13201 1228 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 CRHR2Q13324 411 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 SNW1Q13573 536 aaKnown RBP9.34□□□□□ -0.91
USP4-210ENST00000483212 CALCRLQ16602 461 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 SKOR2Q2VWA4 1001 aaPredicted RBP9.34□□□□□ -0.91
USP4-210ENST00000483212 CEP55Q53EZ4 464 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 PRR16Q569H4 304 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 ARHGEF16Q5VV41 709 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 XRRA1Q6P2D8 792 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 CCAR1Q8IX12 1150 aaKnown RBP9.34□□□□□ -0.91
USP4-210ENST00000483212 FMR1NBQ8N0W7 255 aaPredicted RBP9.34□□□□□ -0.91
USP4-210ENST00000483212 ABRAQ8N0Z2 381 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 ANKRD35Q8N283 1001 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 IGSF22Q8N9C0 903 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 FSIP1Q8NA03 581 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 DNERQ8NFT8 737 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 MORC4Q8TE76 937 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 NSUN6Q8TEA1 469 aaKnown RBP9.34□□□□□ -0.91
USP4-210ENST00000483212 MRPS27Q92552 414 aaKnown RBP9.34□□□□□ -0.91
USP4-210ENST00000483212 ZFP91Q96JP5 570 aaPredicted RBP9.34□□□□□ -0.91
USP4-210ENST00000483212 MMP19Q99542 508 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 MXRA8Q9BRK3 442 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 CFHR5Q9BXR6 569 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 JADE2Q9NQC1 790 aa9.34□□□□□ -0.91
USP4-210ENST00000483212 DDX49Q9Y6V7 483 aaKnown RBP9.34□□□□□ -0.91
USP4-210ENST00000483212 PLXNB2O15031 1838 aa9.33□□□□□ -0.92
USP4-210ENST00000483212 A0A087X0B3 334 aa9.33□□□□□ -0.92
USP4-210ENST00000483212 A0A1B0GVL5 298 aa9.33□□□□□ -0.92
USP4-210ENST00000483212 NR1I2O75469 434 aa9.33□□□□□ -0.92
USP4-210ENST00000483212 PGK2P07205 417 aa9.33□□□□□ -0.92
USP4-210ENST00000483212 ARP10275 920 aa9.33□□□□□ -0.92
USP4-210ENST00000483212 FCER1AP12319 257 aa9.33□□□□□ -0.92
USP4-210ENST00000483212 LONP1P36776 959 aaKnown RBP9.33□□□□□ -0.92
USP4-210ENST00000483212 HTRA3P83110 453 aa9.33□□□□□ -0.92
USP4-210ENST00000483212 SETQ01105 290 aaPredicted RBP9.33□□□□□ -0.92
USP4-210ENST00000483212 GRM1Q13255 1194 aa9.33□□□□□ -0.92
USP4-210ENST00000483212 SEMA3FQ13275 785 aa9.33□□□□□ -0.92
USP4-210ENST00000483212 GRB14Q14449 540 aa9.33□□□□□ -0.92
USP4-210ENST00000483212 KCTD2Q14681 263 aa9.33□□□□□ -0.92
USP4-210ENST00000483212 ZNF792Q3KQV3 632 aa9.33□□□□□ -0.92
USP4-210ENST00000483212 SPECC1Q5M775 1068 aa9.33□□□□□ -0.92
USP4-210ENST00000483212 B3GNT9Q6UX72 402 aa9.33□□□□□ -0.92
USP4-210ENST00000483212 DTHD1Q6ZMT9 781 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms