RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 USP44Q9H0E7 712 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 PCDHA12Q9UN75 941 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 MAD1L1Q9Y6D9 718 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 ERVV-1B6SEH8 477 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 IREB2P48200 963 aaKnown RBP9.58□□□□□ -0.88
SYNE1-224ENST00000478916 TRIM60Q495X7 471 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 TMTC4Q5T4D3 741 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 KIF1BO60333 1816 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 E9PMD0 336 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 INHBAP08476 426 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 XRCC5P13010 732 aaKnown RBP9.58□□□□□ -0.88
SYNE1-224ENST00000478916 KCNA4P22459 653 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 NEK2P51955 445 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 GUCY2DQ02846 1103 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 EXOC4Q96A65 974 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 UIMC1Q96RL1 719 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 SERPINI1Q99574 410 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 NOP53Q9NZM5 478 aaKnown RBP9.58□□□□□ -0.88
SYNE1-224ENST00000478916 ZBTB1Q9Y2K1 713 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 GADD45BO75293 160 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-224ENST00000478916 OR52Z1P0C646 297 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 LRRC24Q50LG9 513 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 FAM133BQ5BKY9 247 aaKnown RBP9.58□□□□□ -0.88
SYNE1-224ENST00000478916 ARHGEF18Q6ZSZ5 1173 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 NOSTRINQ8IVI9 506 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 AMNQ9BXJ7 453 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 ANO3Q9BYT9 981 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 ERVK-7P63135 1459 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 ABCA8O94911 1581 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 CDC42BPGQ6DT37 1551 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 PSDA5PKW4 1024 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-224ENST00000478916 KCNJ18B7U540 433 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 TTLL1O95922 423 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 IFNAR2P48551 515 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 KCNJ12Q14500 433 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 EXOC8Q8IYI6 725 aa9.58□□□□□ -0.88
SYNE1-224ENST00000478916 IPO11Q9UI26 975 aaKnown RBP9.58□□□□□ -0.88
SYNE1-224ENST00000478916 EPHB4P54760 987 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 POLA2Q14181 598 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 ARHGAP44Q17R89 818 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 PAWRQ96IZ0 340 aaKnown RBP9.57□□□□□ -0.88
SYNE1-224ENST00000478916 NLRC4Q9NPP4 1024 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 ARAP3Q8WWN8 1544 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 CLRN2A0PK11 232 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 ECE1P42892 770 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 SEPT2Q15019 361 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 ERFEQ4G0M1 354 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 EP400NLQ6ZTU2 488 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 MYOCDQ8IZQ8 938 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 DHX36Q9H2U1 1008 aaKnown RBP9.57□□□□□ -0.88
SYNE1-224ENST00000478916 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.57□□□□□ -0.88
SYNE1-224ENST00000478916 HNRNPCL2B2RXH8 293 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 XPOTO43592 962 aaKnown RBP9.57□□□□□ -0.88
SYNE1-224ENST00000478916 HNRNPCL1O60812 293 aaKnown RBP9.57□□□□□ -0.88
SYNE1-224ENST00000478916 LMNB1P20700 586 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 ZNF449Q6P9G9 518 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 CDC37L1Q7L3B6 337 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 DESI2Q9BSY9 194 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 C1orf112Q9NSG2 853 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 IGSF1Q8N6C5 1336 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 GSTA4O15217 222 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 BUB1O43683 1085 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 HSPD1P10809 573 aaKnown RBP9.57□□□□□ -0.88
SYNE1-224ENST00000478916 MAGEA9P43362 315 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 CAPN12Q6ZSI9 719 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 RPS6KC1Q96S38 1066 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 SUGCTQ9HAC7 445 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 ZNF277Q9NRM2 450 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-224ENST00000478916 FGFR1OP2Q9NVK5 253 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 PCDHA1Q9Y5I3 950 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 MCF2P10911 925 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 ABI1Q8IZP0 508 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 POMGNT1Q8WZA1 660 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 COPRSQ9NQ92 184 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 GOLGA8CPA6NN73 597 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 KIF1CO43896 1103 aaKnown RBP9.57□□□□□ -0.88
SYNE1-224ENST00000478916 SEC24BO95487 1268 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 ABCB4P21439 1286 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 CYP2J2P51589 502 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 RAB44Q7Z6P3 723 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-224ENST00000478916 TRMT44Q8IYL2 757 aaKnown RBP9.57□□□□□ -0.88
SYNE1-224ENST00000478916 RETREG2Q8NC44 543 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 ATP6V0A1Q93050 837 aa9.57□□□□□ -0.88
SYNE1-224ENST00000478916 POC1B-GALNT4F8VUJ3 575 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 hCG_1984214I3L0E3 225 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 MORC3Q14149 939 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 HP1BP3Q5SSJ5 553 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-224ENST00000478916 TRIM50Q86XT4 487 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 ZNF713Q8N859 430 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-224ENST00000478916 UHMK1Q8TAS1 419 aaKnown RBP9.56□□□□□ -0.88
SYNE1-224ENST00000478916 COL4A3BPQ9Y5P4 624 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 RNF123Q5XPI4 1314 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 CAPN9O14815 690 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 SERPINI2O75830 405 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 OATP04181 439 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 ART3Q13508 389 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 MMS19Q96T76 1030 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 TECP42680 631 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 ICE2Q659A1 982 aa9.56□□□□□ -0.88
SYNE1-224ENST00000478916 BLZF1Q9H2G9 400 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms