RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	ADAMTS3	O15072	1205 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	CTDNEP1	O95476	244 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	NR3C2	P08235	984 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	SMPD1	P17405	629 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	TNFAIP2	Q03169	654 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	ST3GAL1	Q11201	340 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	PGM5	Q15124	567 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	PWP2	Q15269	919 aa	Known RBP	11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	RABEP1	Q15276	862 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	TAPT1	Q6NXT6	567 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	PPP1R18	Q6NYC8	613 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	SAMD3	Q8N6K7	520 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	EFCAB3	Q8N7B9	438 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	ZNF713	Q8N859	430 aa	Predicted RBP	11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	GTF3C6	Q969F1	213 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	PAWR	Q96IZ0	340 aa	Known RBP	11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	PGBD1	Q96JS3	809 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	AIFM3	Q96NN9	605 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	SCUBE2	Q9NQ36	999 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	TMEM260	Q9NX78	707 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	VPS54	Q9P1Q0	977 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	RBM27	Q9P2N5	1060 aa	Known RBP	11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	SMCHD1	A6NHR9	2005 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	SYNRG	Q9UMZ2	1314 aa		11.8	□□□□□ -0.52
HDAC6-222	ENST00000478095	BAZ2B	Q9UIF8	2168 aa	Known RBP	11.79	□□□□□ -0.52
HDAC6-222	ENST00000478095	MYADML2	A6NDP7	307 aa		11.79	□□□□□ -0.52
HDAC6-222	ENST00000478095		B4DLN1	442 aa		11.79	□□□□□ -0.52
HDAC6-222	ENST00000478095	CDKL5	O76039	1030 aa		11.79	□□□□□ -0.52
HDAC6-222	ENST00000478095	RGS19	P49795	217 aa		11.79	□□□□□ -0.52
HDAC6-222	ENST00000478095	MRPL12	P52815	198 aa	Known RBP	11.79	□□□□□ -0.52
HDAC6-222	ENST00000478095	LRRC41	Q15345	812 aa		11.79	□□□□□ -0.52
HDAC6-222	ENST00000478095	STXBP2	Q15833	593 aa		11.79	□□□□□ -0.52
HDAC6-222	ENST00000478095	SEPT14	Q6ZU15	432 aa		11.79	□□□□□ -0.52
HDAC6-222	ENST00000478095	UBE2Q1	Q7Z7E8	422 aa		11.79	□□□□□ -0.52
HDAC6-222	ENST00000478095	CCDC83	Q8IWF9	413 aa		11.79	□□□□□ -0.52
HDAC6-222	ENST00000478095	IWS1	Q96ST2	819 aa		11.79	□□□□□ -0.52
HDAC6-222	ENST00000478095	WDR11	Q9BZH6	1224 aa		11.79	□□□□□ -0.52
HDAC6-222	ENST00000478095	RIC8A	Q9NPQ8	531 aa		11.79	□□□□□ -0.52
HDAC6-222	ENST00000478095	LIMCH1	Q9UPQ0	1083 aa		11.79	□□□□□ -0.52
HDAC6-222	ENST00000478095	KIAA0100	Q14667	2235 aa	Known RBP	11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	MKI67	P46013	3256 aa	Known RBP	11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	SPDYE3	A6NKU9	549 aa		11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	DYNC1LI2	O43237	492 aa	Predicted RBP	11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	JAK2	O60674	1132 aa		11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	ADAMTS4	O75173	837 aa		11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	DUSP11	O75319	330 aa	Known RBP	11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	ARIH2	O95376	493 aa		11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	CD2BP2	O95400	341 aa	Known RBP	11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	DEXI	O95424	95 aa		11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	C6orf222	P0C671	652 aa	Predicted RBP	11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	CCND2	P30279	289 aa		11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	MLLT1	Q03111	559 aa	Predicted RBP	11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	IQSEC1	Q6DN90	963 aa		11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	TLK2	Q86UE8	772 aa		11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	ANKLE1	Q8NAG6	615 aa		11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	CCDC12	Q8WUD4	166 aa	Predicted RBP	11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	COPS5	Q92905	334 aa		11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	C11orf49	Q9H6J7	331 aa		11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	PCDHA6	Q9UN73	950 aa		11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	GNE	Q9Y223	722 aa	Known RBP	11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	PCDHA8	Q9Y5H6	950 aa		11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	FRMPD4	Q14CM0	1322 aa		11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	LCT	P09848	1927 aa		11.78	□□□□□ -0.52
HDAC6-222	ENST00000478095	KBTBD13	C9JR72	458 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	DNM1L	O00429	736 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	ST18	O60284	1047 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	SORBS3	O60504	671 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	EIF3J	O75822	258 aa	Known RBP	11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	RGS20	O76081	388 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	TXN	P10599	105 aa	Known RBP	11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	NLRP5	P59047	1200 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	MRPS9	P82933	396 aa	Known RBP	11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	BEX3	Q00994	111 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	LY6K	Q17RY6	165 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	JAKMIP3	Q5VZ66	844 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	NECAB2	Q7Z6G3	386 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	RNF180	Q86T96	592 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	VSIG10L	Q86VR7	867 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	ARRDC4	Q8NCT1	418 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	NSUN7	Q8NE18	718 aa	Known RBP	11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	CCDC148	Q8NFR7	591 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	RASGRP4	Q8TDF6	673 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	SCFD2	Q8WU76	684 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	ANO3	Q9BYT9	981 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	ZMYND12	Q9H0C1	365 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	C6orf50	Q9HD87	102 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	GJB4	Q9NTQ9	266 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	RTEL1	Q9NZ71	1219 aa		11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	ORC3	Q9UBD5	711 aa	Predicted RBP	11.77	□□□□□ -0.53
HDAC6-222	ENST00000478095	PLXNA1	Q9UIW2	1896 aa		11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	RBM47	A0AV96	593 aa	Known RBP	11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	ESYT2	A0FGR8	921 aa		11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	CLK2	P49760	499 aa	Known RBP	11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	FOSB	P53539	338 aa		11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	GJA9	P57773	515 aa		11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	TTLL4	Q14679	1199 aa		11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	DUSP28	Q4G0W2	176 aa		11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	REXO1	Q8N1G1	1221 aa	Known RBP	11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	OR6J1	Q8NGC5	347 aa		11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	FERMT2	Q96AC1	680 aa		11.76	□□□□□ -0.53

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