RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 DDX41Q9UJV9 622 aaKnown RBP13.64□□□□□ -0.23
PTPRF-212ENST00000477970 QRICH1Q2TAL8 776 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 SLFN13Q68D06 897 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 KCTD17Q8N5Z5 321 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 CDK5RAP3Q96JB5 506 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 PLIN2Q99541 437 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 MAPK8IP1Q9UQF2 711 aa13.64□□□□□ -0.23
PTPRF-212ENST00000477970 C21orf2O43822 256 aa13.63□□□□□ -0.23
PTPRF-212ENST00000477970 TNNI2P48788 182 aa13.63□□□□□ -0.23
PTPRF-212ENST00000477970 SLFN12Q8IYM2 578 aa13.63□□□□□ -0.23
PTPRF-212ENST00000477970 SNX29Q8TEQ0 813 aa13.63□□□□□ -0.23
PTPRF-212ENST00000477970 DESI2Q9BSY9 194 aa13.63□□□□□ -0.23
PTPRF-212ENST00000477970 KIF5CO60282 957 aa13.63□□□□□ -0.23
PTPRF-212ENST00000477970 URI1O94763 535 aaPredicted RBP13.63□□□□□ -0.23
PTPRF-212ENST00000477970 KRT9P35527 623 aa13.63□□□□□ -0.23
PTPRF-212ENST00000477970 SLC1A4P43007 532 aa13.63□□□□□ -0.23
PTPRF-212ENST00000477970 KCTD1Q719H9 257 aa13.63□□□□□ -0.23
PTPRF-212ENST00000477970 CNOT6LQ96LI5 555 aaKnown RBP13.63□□□□□ -0.23
PTPRF-212ENST00000477970 COBLO75128 1261 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 CDC37Q16543 378 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-212ENST00000477970 UBE2SQ16763 222 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 Q4G0T1 1027 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 MIIPQ5JXC2 388 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 KIAA0825Q8IV33 1275 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 CPLX3Q8WVH0 158 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 SEMA6BQ9H3T3 888 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 KCNQ5Q9NR82 932 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 LUC7L2Q9Y383 392 aaKnown RBP13.62□□□□□ -0.23
PTPRF-212ENST00000477970 RNF225M0QZC1 329 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-212ENST00000477970 FOSP01100 380 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-212ENST00000477970 PRELPP51888 382 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 ICA1Q05084 483 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 MCM6Q14566 821 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 RSRC2Q7L4I2 434 aaKnown RBP13.62□□□□□ -0.23
PTPRF-212ENST00000477970 MNS1Q8NEH6 495 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 TAOK3Q9H2K8 898 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 HERC5Q9UII4 1024 aaKnown RBP13.62□□□□□ -0.23
PTPRF-212ENST00000477970 TTC26A0AVF1 554 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 FCER1AP12319 257 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 TRAF1Q13077 416 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 FBXO38Q6PIJ6 1188 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 TRIM34Q9BYJ4 488 aa13.62□□□□□ -0.23
PTPRF-212ENST00000477970 HNRNPH3P31942 346 aaKnown RBP13.61□□□□□ -0.23
PTPRF-212ENST00000477970 ABCB5Q2M3G0 1257 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 C9orf131Q5VYM1 1079 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 SMAP1Q8IYB5 467 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-212ENST00000477970 AMNQ9BXJ7 453 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 ANO3Q9BYT9 981 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 PCDHA1Q9Y5I3 950 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 POTEMA6NI47 508 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 MEIS2O14770 477 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 SLC16A2P36021 539 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 ARHGAP25P42331 645 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 ZBED6P86452 979 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 ERCC6LQ2NKX8 1250 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 CCDC170Q8IYT3 715 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 ZNF784Q8NCA9 323 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-212ENST00000477970 UBE2Q2Q8WVN8 375 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 UBXN4Q92575 508 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 DNAJC19Q96DA6 116 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 PCDHA12Q9UN75 941 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 PIK3CDO00329 1044 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 CIITAP33076 1130 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 RASSF7Q02833 373 aa13.61□□□□□ -0.23
PTPRF-212ENST00000477970 PITPNM2Q9BZ72 1349 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 FRMD3A2A2Y4 597 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 RASSF10A6NK89 507 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 NDUFA10O95299 355 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 ZC3H3Q8IXZ2 948 aaKnown RBP13.6□□□□□ -0.23
PTPRF-212ENST00000477970 LRRN4CLQ8ND94 238 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 DDX12PQ92771 950 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 EDEM3Q9BZQ6 932 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 EPN1Q9Y6I3 576 aaPredicted RBP13.6□□□□□ -0.23
PTPRF-212ENST00000477970 B4DLN1 442 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 F5H6K3 240 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 ATP8B1O43520 1251 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 CYP3A4P08684 503 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 SREBF1P36956 1147 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 PPP2R3AQ06190 1150 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 KLRC3Q07444 240 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 ZCWPW2Q504Y3 356 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 WDR59Q6PJI9 974 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 GPR161Q8N6U8 529 aaKnown RBP13.6□□□□□ -0.23
PTPRF-212ENST00000477970 NUDT12Q9BQG2 462 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 CARD6Q9BX69 1037 aa13.6□□□□□ -0.23
PTPRF-212ENST00000477970 MAN2A1Q16706 1144 aa13.59□□□□□ -0.23
PTPRF-212ENST00000477970 FKBP15Q5T1M5 1219 aa13.59□□□□□ -0.23
PTPRF-212ENST00000477970 SYDE2Q5VT97 1194 aa13.59□□□□□ -0.23
PTPRF-212ENST00000477970 ETNPPLQ8TBG4 499 aa13.59□□□□□ -0.23
PTPRF-212ENST00000477970 RABGGTAQ92696 567 aa13.59□□□□□ -0.23
PTPRF-212ENST00000477970 HAUS4Q9H6D7 363 aa13.59□□□□□ -0.23
PTPRF-212ENST00000477970 ARGLU1Q9NWB6 273 aaPredicted RBP13.59□□□□□ -0.23
PTPRF-212ENST00000477970 COL4A5P29400 1685 aa13.59□□□□□ -0.23
PTPRF-212ENST00000477970 MARSP56192 900 aaKnown RBP13.59□□□□□ -0.23
PTPRF-212ENST00000477970 TBC1D8BQ0IIM8 1120 aa13.59□□□□□ -0.23
PTPRF-212ENST00000477970 TSR1Q2NL82 804 aaKnown RBP13.59□□□□□ -0.23
PTPRF-212ENST00000477970 VWA3BQ502W6 1294 aa13.59□□□□□ -0.23
PTPRF-212ENST00000477970 ARHGAP29Q52LW3 1261 aa13.59□□□□□ -0.23
PTPRF-212ENST00000477970 RBM26Q5T8P6 1007 aaKnown RBP13.59□□□□□ -0.23
PTPRF-212ENST00000477970 LRRC55Q6ZSA7 311 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms