RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-208ENST00000475235 BEX3Q00994 111 aa13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 TTLL4Q14679 1199 aa13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 STXBP2Q15833 593 aa13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 BRDTQ58F21 947 aaPredicted RBP13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 ARHGEF16Q5VV41 709 aa13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 EXOC8Q8IYI6 725 aa13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 TBC1D5Q92609 795 aa13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 TAAR1Q96RJ0 339 aa13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 COL20A1Q9P218 1284 aa13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 ARVCFO00192 962 aa13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 SLC35G1Q2M3R5 365 aa13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 SYNE3Q6ZMZ3 975 aa13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 SGMS1Q86VZ5 419 aa13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 RRP36Q96EU6 259 aaKnown RBP13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 MYL10Q9BUA6 226 aa13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 GPHNQ9NQX3 736 aaPredicted RBP13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 TMEM39AQ9NV64 488 aa13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 POLR3EQ9NVU0 708 aa13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 SEC63Q9UGP8 760 aaKnown RBP13.29□□□□□ -0.28
HLA-DOB-208ENST00000475235 TRIM43BA6NCK2 446 aa13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 GCOM1H8Y6P7 765 aaPredicted RBP13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 OPLAHO14841 1288 aa13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 KIAA0355O15063 1070 aa13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 TLR3O15455 904 aaKnown RBP13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 EIF3JO75822 258 aaKnown RBP13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 REC8O95072 547 aa13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 POLR2MP0CAP2 368 aa13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 TXNP10599 105 aaKnown RBP13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 RAG1P15918 1043 aa13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 CDK7P50613 346 aa13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 LRIT3Q3SXY7 679 aa13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 CXCL17Q6UXB2 119 aa13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 DHX32Q7L7V1 743 aaKnown RBP13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 OR6J1Q8NGC5 347 aa13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 TRIM43Q96BQ3 446 aaPredicted RBP13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 PXMP2Q9NR77 195 aa13.28□□□□□ -0.28
HLA-DOB-208ENST00000475235 KPNA6O60684 536 aa13.27□□□□□ -0.29
HLA-DOB-208ENST00000475235 EIF2AK2P19525 551 aaKnown RBP13.27□□□□□ -0.29
HLA-DOB-208ENST00000475235 FAAP100Q0VG06 881 aa13.27□□□□□ -0.29
HLA-DOB-208ENST00000475235 TMEM63BQ5T3F8 832 aa13.27□□□□□ -0.29
HLA-DOB-208ENST00000475235 SH3RF1Q7Z6J0 888 aa13.27□□□□□ -0.29
HLA-DOB-208ENST00000475235 BADQ92934 168 aa13.27□□□□□ -0.29
HLA-DOB-208ENST00000475235 PPP4R2Q9NY27 417 aa13.27□□□□□ -0.29
HLA-DOB-208ENST00000475235 LRRC37A2A6NM11 1700 aa13.27□□□□□ -0.29
HLA-DOB-208ENST00000475235 EPB41L2O43491 1005 aaKnown RBP13.26□□□□□ -0.29
HLA-DOB-208ENST00000475235 NR3C2P08235 984 aa13.26□□□□□ -0.29
HLA-DOB-208ENST00000475235 EXOSC10Q01780 885 aaKnown RBP13.26□□□□□ -0.29
HLA-DOB-208ENST00000475235 ITGA7Q13683 1181 aa13.26□□□□□ -0.29
HLA-DOB-208ENST00000475235 SEPT14Q6ZU15 432 aa13.26□□□□□ -0.29
HLA-DOB-208ENST00000475235 EGFL6Q8IUX8 553 aa13.26□□□□□ -0.29
HLA-DOB-208ENST00000475235 FAM126BQ8IXS8 530 aa13.26□□□□□ -0.29
HLA-DOB-208ENST00000475235 RASEFQ8IZ41 740 aa13.26□□□□□ -0.29
HLA-DOB-208ENST00000475235 FANCBQ8NB91 859 aa13.26□□□□□ -0.29
HLA-DOB-208ENST00000475235 SLC43A3Q8NBI5 491 aa13.26□□□□□ -0.29
HLA-DOB-208ENST00000475235 PDCD2LQ9BRP1 358 aa13.26□□□□□ -0.29
HLA-DOB-208ENST00000475235 LRRC2Q9BYS8 371 aa13.26□□□□□ -0.29
HLA-DOB-208ENST00000475235 RBM28Q9NW13 759 aaKnown RBP13.26□□□□□ -0.29
HLA-DOB-208ENST00000475235 RANBP2P49792 3224 aaKnown RBP13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 GOLGA6L3A6NEY3 463 aa13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 A6NJR5 290 aa13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 PLEKHA8P1O95397 391 aa13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 PTGS1P23219 599 aa13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 HOXA13P31271 388 aaPredicted RBP13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 HSPA4P34932 840 aa13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 COL9A3Q14050 684 aaPredicted RBP13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 CCDC62Q6P9F0 684 aa13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 KCNV1Q6PIU1 500 aa13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 MICU3Q86XE3 530 aa13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 PLCD3Q8N3E9 789 aa13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 SRBD1Q8N5C6 995 aaKnown RBP13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 PIBF1Q8WXW3 757 aa13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 KCNB2Q92953 911 aa13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 MTG1Q9BT17 334 aaPredicted RBP13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 TBX21Q9UL17 535 aa13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 MRVI1Q9Y6F6 885 aa13.25□□□□□ -0.29
HLA-DOB-208ENST00000475235 CEP290O15078 2479 aa13.24□□□□□ -0.29
HLA-DOB-208ENST00000475235 ARIH2O95376 493 aa13.24□□□□□ -0.29
HLA-DOB-208ENST00000475235 TIMP1P01033 207 aa13.24□□□□□ -0.29
HLA-DOB-208ENST00000475235 GH1P01241 217 aa13.24□□□□□ -0.29
HLA-DOB-208ENST00000475235 RXRAP19793 462 aa13.24□□□□□ -0.29
HLA-DOB-208ENST00000475235 PURAQ00577 322 aaKnown RBP13.24□□□□□ -0.29
HLA-DOB-208ENST00000475235 ADCK5Q3MIX3 580 aa13.24□□□□□ -0.29
HLA-DOB-208ENST00000475235 GPR153Q6NV75 609 aa13.24□□□□□ -0.29
HLA-DOB-208ENST00000475235 APOA5Q6Q788 366 aa13.24□□□□□ -0.29
HLA-DOB-208ENST00000475235 TMTC3Q6ZXV5 915 aa13.24□□□□□ -0.29
HLA-DOB-208ENST00000475235 VSIG10LQ86VR7 867 aa13.24□□□□□ -0.29
HLA-DOB-208ENST00000475235 CUL5Q93034 780 aa13.24□□□□□ -0.29
HLA-DOB-208ENST00000475235 DNAH12Q6ZR08 3092 aa13.24□□□□□ -0.29
HLA-DOB-208ENST00000475235 ZBTB43O43298 467 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 STAM2O75886 525 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 CD4P01730 458 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 MYL3P08590 195 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 MYCLP12524 364 aaPredicted RBP13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 CCND2P30279 289 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 RCAN1P53805 252 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 FPGSQ05932 587 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 PGM5Q15124 567 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 FCHSD1Q86WN1 690 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 SMARCC2Q8TAQ2 1214 aa13.23□□□□□ -0.29
HLA-DOB-208ENST00000475235 COPS5Q92905 334 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms