RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SPZ1Q9BXG8 430 aa16.36■□□□□ 0.21
UPF3A-204ENST00000475218 SEZ6LQ9BYH1 1024 aa16.36■□□□□ 0.21
UPF3A-204ENST00000475218 SCN5AQ14524 2016 aa16.35■□□□□ 0.21
UPF3A-204ENST00000475218 RBAK-RBAKDNI3L0D1 243 aa16.35■□□□□ 0.21
UPF3A-204ENST00000475218 CCL23P55773 120 aa16.35■□□□□ 0.21
UPF3A-204ENST00000475218 PPIGQ13427 754 aaKnown RBP eCLIP16.35■□□□□ 0.21
UPF3A-204ENST00000475218 PGM5Q15124 567 aa16.35■□□□□ 0.21
UPF3A-204ENST00000475218 ZNF365Q70YC5 407 aa16.35■□□□□ 0.21
UPF3A-204ENST00000475218 VSIG10LQ86VR7 867 aa16.35■□□□□ 0.21
UPF3A-204ENST00000475218 RAB11FIP4Q86YS3 637 aa16.35■□□□□ 0.21
UPF3A-204ENST00000475218 RASEFQ8IZ41 740 aa16.35■□□□□ 0.21
UPF3A-204ENST00000475218 CMTR1Q8N1G2 835 aaKnown RBP16.35■□□□□ 0.21
UPF3A-204ENST00000475218 TMEM199Q8N511 208 aa16.35■□□□□ 0.21
UPF3A-204ENST00000475218 GPKOWQ92917 476 aaPredicted RBP eCLIP16.35■□□□□ 0.21
UPF3A-204ENST00000475218 TMEM87BQ96K49 555 aa16.35■□□□□ 0.21
UPF3A-204ENST00000475218 MAP3K20Q9NYL2 800 aaKnown RBP16.35■□□□□ 0.21
UPF3A-204ENST00000475218 MYH7BA7E2Y1 1941 aa16.35■□□□□ 0.21
UPF3A-204ENST00000475218 FRMPD4Q14CM0 1322 aa16.35■□□□□ 0.21
UPF3A-204ENST00000475218 GH1P01241 217 aa16.34■□□□□ 0.21
UPF3A-204ENST00000475218 LIFRP42702 1097 aa16.34■□□□□ 0.21
UPF3A-204ENST00000475218 SP2Q02086 613 aa16.34■□□□□ 0.21
UPF3A-204ENST00000475218 SAMD3Q8N6K7 520 aa16.34■□□□□ 0.21
UPF3A-204ENST00000475218 EMID1Q96A84 441 aaPredicted RBP16.34■□□□□ 0.21
UPF3A-204ENST00000475218 SEMA6BQ9H3T3 888 aa16.34■□□□□ 0.21
UPF3A-204ENST00000475218 IL23AQ9NPF7 189 aa16.34■□□□□ 0.21
UPF3A-204ENST00000475218 CXXC1Q9P0U4 656 aaPredicted RBP16.34■□□□□ 0.21
UPF3A-204ENST00000475218 GCOM1H8Y6P7 765 aaPredicted RBP16.33■□□□□ 0.21
UPF3A-204ENST00000475218 KPNA6O60684 536 aa16.33■□□□□ 0.21
UPF3A-204ENST00000475218 POLR2MP0CAP2 368 aa16.33■□□□□ 0.21
UPF3A-204ENST00000475218 ADCK5Q3MIX3 580 aa16.33■□□□□ 0.21
UPF3A-204ENST00000475218 NFRKBQ6P4R8 1299 aa16.33■□□□□ 0.21
UPF3A-204ENST00000475218 CASC1Q6TDU7 716 aa16.33■□□□□ 0.21
UPF3A-204ENST00000475218 BCAS3Q9H6U6 928 aa16.33■□□□□ 0.21
UPF3A-204ENST00000475218 GRXCR1A8MXD5 290 aa16.33■□□□□ 0.2
UPF3A-204ENST00000475218 MYCLP12524 364 aaPredicted RBP16.33■□□□□ 0.2
UPF3A-204ENST00000475218 MRPS9P82933 396 aaKnown RBP16.33■□□□□ 0.2
UPF3A-204ENST00000475218 EXOSC10Q01780 885 aaKnown RBP16.33■□□□□ 0.2
UPF3A-204ENST00000475218 ZNF697Q5TEC3 545 aa16.33■□□□□ 0.2
UPF3A-204ENST00000475218 FCHSD1Q86WN1 690 aa16.33■□□□□ 0.2
UPF3A-204ENST00000475218 SCLYQ96I15 445 aa16.33■□□□□ 0.2
UPF3A-204ENST00000475218 REV3LO60673 3130 aa16.33■□□□□ 0.2
UPF3A-204ENST00000475218 TANC1Q9C0D5 1861 aa16.32■□□□□ 0.2
UPF3A-204ENST00000475218 MEIS2O14770 477 aa16.32■□□□□ 0.2
UPF3A-204ENST00000475218 HOXD8P13378 290 aaPredicted RBP16.32■□□□□ 0.2
UPF3A-204ENST00000475218 SMARCA1P28370 1054 aa16.32■□□□□ 0.2
UPF3A-204ENST00000475218 SGMS1Q86VZ5 419 aa16.32■□□□□ 0.2
UPF3A-204ENST00000475218 CTCFLQ8NI51 663 aaPredicted RBP16.32■□□□□ 0.2
UPF3A-204ENST00000475218 TCEANC2Q96MN5 208 aa16.32■□□□□ 0.2
UPF3A-204ENST00000475218 CDX2Q99626 313 aaPredicted RBP16.32■□□□□ 0.2
UPF3A-204ENST00000475218 MRVI1Q9Y6F6 885 aa16.32■□□□□ 0.2
UPF3A-204ENST00000475218 GBF1Q92538 1859 aa16.32■□□□□ 0.2
UPF3A-204ENST00000475218 hCG_1642624A0A1W2PR95 340 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 CDC45O75419 566 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 KIF5BP33176 963 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 PBX2P40425 430 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 SEMA3FQ13275 785 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 TSGA10IPQ3SY00 556 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 BRDTQ58F21 947 aaPredicted RBP16.31■□□□□ 0.2
UPF3A-204ENST00000475218 MYSM1Q5VVJ2 828 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 PSRC1Q6PGN9 363 aaPredicted RBP16.31■□□□□ 0.2
UPF3A-204ENST00000475218 HERVK_113Q902F9 699 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 DOCK5Q9H7D0 1870 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.31■□□□□ 0.2
UPF3A-204ENST00000475218 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.31■□□□□ 0.2
UPF3A-204ENST00000475218 CCDC69A6NI79 296 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 SORBS3O60504 671 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 UBA1P22314 1058 aaKnown RBP16.31■□□□□ 0.2
UPF3A-204ENST00000475218 DNAJB2P25686 324 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 HSDL1Q3SXM5 330 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 FAM47CQ5HY64 1035 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 GDF6Q6KF10 455 aaPredicted RBP16.31■□□□□ 0.2
UPF3A-204ENST00000475218 USP17L6PQ6QN14 398 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 NFXL1Q6ZNB6 911 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 SESTD1Q86VW0 696 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 TMTC2Q8N394 836 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 PPTC7Q8NI37 304 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 RRP36Q96EU6 259 aaKnown RBP16.31■□□□□ 0.2
UPF3A-204ENST00000475218 BRPF3Q9ULD4 1205 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 TELO2Q9Y4R8 837 aa16.31■□□□□ 0.2
UPF3A-204ENST00000475218 HAS3O00219 553 aa16.3■□□□□ 0.2
UPF3A-204ENST00000475218 F2P00734 622 aa16.3■□□□□ 0.2
UPF3A-204ENST00000475218 SUPT20HL2P0C7V6 817 aa16.3■□□□□ 0.2
UPF3A-204ENST00000475218 PTPN11Q06124 597 aaPredicted RBP16.3■□□□□ 0.2
UPF3A-204ENST00000475218 TRAF1Q13077 416 aa16.3■□□□□ 0.2
UPF3A-204ENST00000475218 HIC1Q14526 733 aa16.3■□□□□ 0.2
UPF3A-204ENST00000475218 CELF3Q5SZQ8 465 aaKnown RBP16.3■□□□□ 0.2
UPF3A-204ENST00000475218 TMTC3Q6ZXV5 915 aa16.3■□□□□ 0.2
UPF3A-204ENST00000475218 DHX38Q92620 1227 aaKnown RBP16.3■□□□□ 0.2
UPF3A-204ENST00000475218 INPP4AQ96PE3 977 aaPredicted RBP16.3■□□□□ 0.2
UPF3A-204ENST00000475218 NEK1Q96PY6 1258 aa16.3■□□□□ 0.2
UPF3A-204ENST00000475218 PBX4Q9BYU1 374 aa16.3■□□□□ 0.2
UPF3A-204ENST00000475218 TRANK1O15050 2925 aa16.3■□□□□ 0.2
UPF3A-204ENST00000475218 TET1Q8NFU7 2136 aa16.3■□□□□ 0.2
UPF3A-204ENST00000475218 PIK3CDO00329 1044 aa16.29■□□□□ 0.2
UPF3A-204ENST00000475218 ZNF286BP0CG31 522 aa16.29■□□□□ 0.2
UPF3A-204ENST00000475218 CCND2P30279 289 aa16.29■□□□□ 0.2
UPF3A-204ENST00000475218 FUT2Q10981 343 aa16.29■□□□□ 0.2
UPF3A-204ENST00000475218 LAMC2Q13753 1193 aa16.29■□□□□ 0.2
UPF3A-204ENST00000475218 GPNMBQ14956 572 aa16.29■□□□□ 0.2
UPF3A-204ENST00000475218 APOA5Q6Q788 366 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms