RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 GH1P01241 217 aa21.83■■□□□ 1.09
CCDC88B-206ENST00000473405 NR3C2P08235 984 aa21.83■■□□□ 1.09
CCDC88B-206ENST00000473405 GRIN2CQ14957 1233 aa21.83■■□□□ 1.09
CCDC88B-206ENST00000473405 SART3Q15020 963 aaKnown RBP21.83■■□□□ 1.09
CCDC88B-206ENST00000473405 TMEM67Q5HYA8 995 aa21.83■■□□□ 1.09
CCDC88B-206ENST00000473405 MAFAQ8NHW3 353 aaPredicted RBP21.83■■□□□ 1.09
CCDC88B-206ENST00000473405 IGDCC4Q8TDY8 1250 aa21.83■■□□□ 1.09
CCDC88B-206ENST00000473405 TTC28Q96AY4 2481 aa21.82■■□□□ 1.08
CCDC88B-206ENST00000473405 DLL1O00548 723 aa21.82■■□□□ 1.08
CCDC88B-206ENST00000473405 RGS20O76081 388 aa21.82■■□□□ 1.08
CCDC88B-206ENST00000473405 FGBP02675 491 aa21.82■■□□□ 1.08
CCDC88B-206ENST00000473405 HOXA13P31271 388 aaPredicted RBP21.82■■□□□ 1.08
CCDC88B-206ENST00000473405 FAM47CQ5HY64 1035 aa21.82■■□□□ 1.08
CCDC88B-206ENST00000473405 OTOP2Q7RTS6 562 aa21.82■■□□□ 1.08
CCDC88B-206ENST00000473405 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.82■■□□□ 1.08
CCDC88B-206ENST00000473405 EMID1Q96A84 441 aaPredicted RBP21.82■■□□□ 1.08
CCDC88B-206ENST00000473405 PDCD2LQ9BRP1 358 aa21.82■■□□□ 1.08
CCDC88B-206ENST00000473405 ZNF576Q9H609 170 aa21.82■■□□□ 1.08
CCDC88B-206ENST00000473405 MAP3K20Q9NYL2 800 aaKnown RBP21.82■■□□□ 1.08
CCDC88B-206ENST00000473405 DDX41Q9UJV9 622 aaKnown RBP21.82■■□□□ 1.08
CCDC88B-206ENST00000473405 TET1Q8NFU7 2136 aa21.82■■□□□ 1.08
CCDC88B-206ENST00000473405 MYO9BQ13459 2157 aa21.81■■□□□ 1.08
CCDC88B-206ENST00000473405 FOSL2P15408 326 aa21.81■■□□□ 1.08
CCDC88B-206ENST00000473405 PTPN11Q06124 597 aaPredicted RBP21.81■■□□□ 1.08
CCDC88B-206ENST00000473405 COL9A3Q14050 684 aaPredicted RBP21.81■■□□□ 1.08
CCDC88B-206ENST00000473405 IL31RAQ8NI17 732 aa21.81■■□□□ 1.08
CCDC88B-206ENST00000473405 KAT2BQ92831 832 aa21.81■■□□□ 1.08
CCDC88B-206ENST00000473405 LSG1Q9H089 658 aaKnown RBP21.81■■□□□ 1.08
CCDC88B-206ENST00000473405 LY9Q9HBG7 655 aa21.81■■□□□ 1.08
CCDC88B-206ENST00000473405 DOCK5Q9H7D0 1870 aa21.81■■□□□ 1.08
CCDC88B-206ENST00000473405 SAMD3Q8N6K7 520 aa21.8■■□□□ 1.08
CCDC88B-206ENST00000473405 CTAGE1Q96RT6 745 aa21.8■■□□□ 1.08
CCDC88B-206ENST00000473405 MTIF3Q9H2K0 278 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-206ENST00000473405 MRVI1Q9Y6F6 885 aa21.8■■□□□ 1.08
CCDC88B-206ENST00000473405 PTPRSQ13332 1948 aa21.8■■□□□ 1.08
CCDC88B-206ENST00000473405 PNMA6FA0A0J9YX94 578 aa21.79■■□□□ 1.08
CCDC88B-206ENST00000473405 PITPNM1O00562 1244 aa21.79■■□□□ 1.08
CCDC88B-206ENST00000473405 PGM5Q15124 567 aa21.79■■□□□ 1.08
CCDC88B-206ENST00000473405 CATIPQ7Z7H3 387 aa21.79■■□□□ 1.08
CCDC88B-206ENST00000473405 ESYT1Q9BSJ8 1104 aa21.79■■□□□ 1.08
CCDC88B-206ENST00000473405 MYL10Q9BUA6 226 aa21.79■■□□□ 1.08
CCDC88B-206ENST00000473405 CHMP4BP1P59074 171 aa21.78■■□□□ 1.08
CCDC88B-206ENST00000473405 TRAF1Q13077 416 aa21.78■■□□□ 1.08
CCDC88B-206ENST00000473405 VSIG10LQ86VR7 867 aa21.78■■□□□ 1.08
CCDC88B-206ENST00000473405 SESTD1Q86VW0 696 aa21.78■■□□□ 1.08
CCDC88B-206ENST00000473405 SKAP1Q86WV1 359 aa21.78■■□□□ 1.08
CCDC88B-206ENST00000473405 RPUSD2Q8IZ73 545 aaKnown RBP21.78■■□□□ 1.08
CCDC88B-206ENST00000473405 ZNF654Q8IZM8 581 aa21.78■■□□□ 1.08
CCDC88B-206ENST00000473405 PPTC7Q8NI37 304 aa21.78■■□□□ 1.08
CCDC88B-206ENST00000473405 FRMPD4Q14CM0 1322 aa21.78■■□□□ 1.08
CCDC88B-206ENST00000473405 BDP1A6H8Y1 2624 aa21.77■■□□□ 1.08
CCDC88B-206ENST00000473405 GCOM1H8Y6P7 765 aaPredicted RBP21.77■■□□□ 1.08
CCDC88B-206ENST00000473405 PRC1O43663 620 aa21.77■■□□□ 1.08
CCDC88B-206ENST00000473405 PFKMP08237 780 aa21.77■■□□□ 1.08
CCDC88B-206ENST00000473405 POLR2MP0CAP2 368 aa21.77■■□□□ 1.08
CCDC88B-206ENST00000473405 MYCLP12524 364 aaPredicted RBP21.77■■□□□ 1.08
CCDC88B-206ENST00000473405 RAB30Q15771 203 aa21.77■■□□□ 1.08
CCDC88B-206ENST00000473405 DGKDQ16760 1214 aa21.77■■□□□ 1.08
CCDC88B-206ENST00000473405 GDF6Q6KF10 455 aaPredicted RBP21.77■■□□□ 1.08
CCDC88B-206ENST00000473405 MAP3K14Q99558 947 aa21.77■■□□□ 1.08
CCDC88B-206ENST00000473405 SPZ1Q9BXG8 430 aa21.77■■□□□ 1.08
CCDC88B-206ENST00000473405 YBX2Q9Y2T7 364 aaKnown RBP21.77■■□□□ 1.08
CCDC88B-206ENST00000473405 SLC27A2O14975 620 aa21.76■■□□□ 1.07
CCDC88B-206ENST00000473405 DDAH1O94760 285 aa21.76■■□□□ 1.07
CCDC88B-206ENST00000473405 F2P00734 622 aa21.76■■□□□ 1.07
CCDC88B-206ENST00000473405 ZNF286BP0CG31 522 aa21.76■■□□□ 1.07
CCDC88B-206ENST00000473405 HOXD8P13378 290 aaPredicted RBP21.76■■□□□ 1.07
CCDC88B-206ENST00000473405 CASTP20810 708 aaKnown RBP21.76■■□□□ 1.07
CCDC88B-206ENST00000473405 DEFB128Q7Z7B8 93 aa21.76■■□□□ 1.07
CCDC88B-206ENST00000473405 GPKOWQ92917 476 aaPredicted RBP eCLIP21.76■■□□□ 1.07
CCDC88B-206ENST00000473405 MTA3Q9BTC8 594 aa21.76■■□□□ 1.07
CCDC88B-206ENST00000473405 SH2B2O14492 632 aaPredicted RBP21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 IQCF3P0C7M6 154 aa21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 UBA1P22314 1058 aaKnown RBP21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 RFC2P35250 354 aa21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 SP2Q02086 613 aa21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 LAMC2Q13753 1193 aa21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 PTGISQ16647 500 aa21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 MYSM1Q5VVJ2 828 aa21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 CASC1Q6TDU7 716 aa21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 FCHSD1Q86WN1 690 aa21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 DHX37Q8IY37 1157 aaKnown RBP21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 PIBF1Q8WXW3 757 aa21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 DHX38Q92620 1227 aaKnown RBP21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 ZFP91Q96JP5 570 aaPredicted RBP21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 MSRAQ9UJ68 235 aa21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 NOD1Q9Y239 953 aa21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 SLC4A7Q9Y6M7 1214 aa21.75■■□□□ 1.07
CCDC88B-206ENST00000473405 ZBBXA8MT70 800 aa21.74■■□□□ 1.07
CCDC88B-206ENST00000473405 HAS3O00219 553 aa21.74■■□□□ 1.07
CCDC88B-206ENST00000473405 CCND2P30279 289 aa21.74■■□□□ 1.07
CCDC88B-206ENST00000473405 MCM5P33992 734 aa21.74■■□□□ 1.07
CCDC88B-206ENST00000473405 RABGGTBP53611 331 aa21.74■■□□□ 1.07
CCDC88B-206ENST00000473405 BFSP2Q13515 415 aa21.74■■□□□ 1.07
CCDC88B-206ENST00000473405 NECTIN1Q15223 517 aa21.74■■□□□ 1.07
CCDC88B-206ENST00000473405 HSDL1Q3SXM5 330 aa21.74■■□□□ 1.07
CCDC88B-206ENST00000473405 KCNV1Q6PIU1 500 aa21.74■■□□□ 1.07
CCDC88B-206ENST00000473405 CTCFLQ8NI51 663 aaPredicted RBP21.74■■□□□ 1.07
CCDC88B-206ENST00000473405 NKX2-4Q9H2Z4 354 aa21.74■■□□□ 1.07
CCDC88B-206ENST00000473405 PRDM12Q9H4Q4 367 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms