RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 OTOP2Q7RTS6 562 aa18.23■□□□□ 0.51
CCDC88B-205ENST00000472524 ZNF654Q8IZM8 581 aa18.23■□□□□ 0.51
CCDC88B-205ENST00000472524 IWS1Q96ST2 819 aa18.23■□□□□ 0.51
CCDC88B-205ENST00000472524 MTG1Q9BT17 334 aaPredicted RBP18.23■□□□□ 0.51
CCDC88B-205ENST00000472524 LY9Q9HBG7 655 aa18.23■□□□□ 0.51
CCDC88B-205ENST00000472524 PRDM6Q9NQX0 595 aa18.23■□□□□ 0.51
CCDC88B-205ENST00000472524 PXMP2Q9NR77 195 aa18.23■□□□□ 0.51
CCDC88B-205ENST00000472524 HOXA13P31271 388 aaPredicted RBP18.22■□□□□ 0.51
CCDC88B-205ENST00000472524 COL9A3Q14050 684 aaPredicted RBP18.22■□□□□ 0.51
CCDC88B-205ENST00000472524 LY6KQ17RY6 165 aa18.22■□□□□ 0.51
CCDC88B-205ENST00000472524 FAM47CQ5HY64 1035 aa18.22■□□□□ 0.51
CCDC88B-205ENST00000472524 NFXL1Q6ZNB6 911 aa18.22■□□□□ 0.51
CCDC88B-205ENST00000472524 PPP1R13LQ8WUF5 828 aa18.22■□□□□ 0.51
CCDC88B-205ENST00000472524 SEZ6LQ9BYH1 1024 aa18.22■□□□□ 0.51
CCDC88B-205ENST00000472524 ALDH8A1Q9H2A2 487 aaPredicted RBP18.22■□□□□ 0.51
CCDC88B-205ENST00000472524 YBX2Q9Y2T7 364 aaKnown RBP18.22■□□□□ 0.51
CCDC88B-205ENST00000472524 PNMA6FA0A0J9YX94 578 aa18.21■□□□□ 0.51
CCDC88B-205ENST00000472524 DDAH1O94760 285 aa18.21■□□□□ 0.51
CCDC88B-205ENST00000472524 NR3C2P08235 984 aa18.21■□□□□ 0.51
CCDC88B-205ENST00000472524 MYCLP12524 364 aaPredicted RBP18.21■□□□□ 0.51
CCDC88B-205ENST00000472524 MCM5P33992 734 aa18.21■□□□□ 0.51
CCDC88B-205ENST00000472524 ADGRE1Q14246 886 aa18.21■□□□□ 0.51
CCDC88B-205ENST00000472524 CCDC62Q6P9F0 684 aa18.21■□□□□ 0.51
CCDC88B-205ENST00000472524 CTCFLQ8NI51 663 aaPredicted RBP18.21■□□□□ 0.51
CCDC88B-205ENST00000472524 PPM1EQ8WY54 764 aa18.21■□□□□ 0.51
CCDC88B-205ENST00000472524 VWCEQ96DN2 955 aa18.21■□□□□ 0.51
CCDC88B-205ENST00000472524 NKX2-4Q9H2Z4 354 aa18.21■□□□□ 0.51
CCDC88B-205ENST00000472524 TRMT13Q9NUP7 481 aaKnown RBP18.21■□□□□ 0.51
CCDC88B-205ENST00000472524 MSRAQ9UJ68 235 aa18.21■□□□□ 0.51
CCDC88B-205ENST00000472524 TANC1Q9C0D5 1861 aa18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 CCDC69A6NI79 296 aa18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 A6NJR5 290 aa18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 SH2B2O14492 632 aaPredicted RBP18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 GH1P01241 217 aa18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 CHMP4BP1P59074 171 aa18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 GHRHRQ02643 423 aa18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 TRAF1Q13077 416 aa18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 NECTIN1Q15223 517 aa18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 RAB30Q15771 203 aa18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 AFG1LQ8WV93 481 aa18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 SCLYQ96I15 445 aa18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 TMEM87BQ96K49 555 aa18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 GAS2L1Q99501 681 aaPredicted RBP18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 LRRC2Q9BYS8 371 aa18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 MTIF3Q9H2K0 278 aaKnown RBP18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 MRVI1Q9Y6F6 885 aa18.2■□□□□ 0.5
CCDC88B-205ENST00000472524 GCOM1H8Y6P7 765 aaPredicted RBP18.19■□□□□ 0.5
CCDC88B-205ENST00000472524 KPNA6O60684 536 aa18.19■□□□□ 0.5
CCDC88B-205ENST00000472524 EIF3JO75822 258 aaKnown RBP18.19■□□□□ 0.5
CCDC88B-205ENST00000472524 POLR2MP0CAP2 368 aa18.19■□□□□ 0.5
CCDC88B-205ENST00000472524 CYP2C9P11712 490 aa18.19■□□□□ 0.5
CCDC88B-205ENST00000472524 RXRAP19793 462 aa18.19■□□□□ 0.5
CCDC88B-205ENST00000472524 KIF5BP33176 963 aa18.19■□□□□ 0.5
CCDC88B-205ENST00000472524 RABGGTBP53611 331 aa18.19■□□□□ 0.5
CCDC88B-205ENST00000472524 ARHGAP1Q07960 439 aa18.19■□□□□ 0.5
CCDC88B-205ENST00000472524 NBPF20Q3BBV1 942 aa18.19■□□□□ 0.5
CCDC88B-205ENST00000472524 FCHSD1Q86WN1 690 aa18.19■□□□□ 0.5
CCDC88B-205ENST00000472524 RAB11FIP4Q86YS3 637 aa18.19■□□□□ 0.5
CCDC88B-205ENST00000472524 PDCD2LQ9BRP1 358 aa18.19■□□□□ 0.5
CCDC88B-205ENST00000472524 MTA3Q9BTC8 594 aa18.19■□□□□ 0.5
CCDC88B-205ENST00000472524 MAP3K20Q9NYL2 800 aaKnown RBP18.19■□□□□ 0.5
CCDC88B-205ENST00000472524 PLEKHA8P1O95397 391 aa18.18■□□□□ 0.5
CCDC88B-205ENST00000472524 MMP3P08254 477 aa18.18■□□□□ 0.5
CCDC88B-205ENST00000472524 PGM5Q15124 567 aa18.18■□□□□ 0.5
CCDC88B-205ENST00000472524 TJAP1Q5JTD0 557 aa18.18■□□□□ 0.5
CCDC88B-205ENST00000472524 SAMD3Q8N6K7 520 aa18.18■□□□□ 0.5
CCDC88B-205ENST00000472524 IL31RAQ8NI17 732 aa18.18■□□□□ 0.5
CCDC88B-205ENST00000472524 SYMPKQ92797 1274 aaKnown RBP18.18■□□□□ 0.5
CCDC88B-205ENST00000472524 RRP36Q96EU6 259 aaKnown RBP18.18■□□□□ 0.5
CCDC88B-205ENST00000472524 ZFP91Q96JP5 570 aaPredicted RBP18.18■□□□□ 0.5
CCDC88B-205ENST00000472524 MAP3K14Q99558 947 aa18.18■□□□□ 0.5
CCDC88B-205ENST00000472524 SPZ1Q9BXG8 430 aa18.18■□□□□ 0.5
CCDC88B-205ENST00000472524 DDX41Q9UJV9 622 aaKnown RBP18.18■□□□□ 0.5
CCDC88B-205ENST00000472524 MUC3AQ02505 3323 aa18.18■□□□□ 0.5
CCDC88B-205ENST00000472524 TET1Q8NFU7 2136 aa18.17■□□□□ 0.5
CCDC88B-205ENST00000472524 SORBS3O60504 671 aa18.17■□□□□ 0.5
CCDC88B-205ENST00000472524 CDC45O75419 566 aa18.17■□□□□ 0.5
CCDC88B-205ENST00000472524 MYOGP15173 224 aa18.17■□□□□ 0.5
CCDC88B-205ENST00000472524 IGFBP4P22692 258 aa18.17■□□□□ 0.5
CCDC88B-205ENST00000472524 RNF20Q5VTR2 975 aa18.17■□□□□ 0.5
CCDC88B-205ENST00000472524 TMTC2Q8N394 836 aa18.17■□□□□ 0.5
CCDC88B-205ENST00000472524 CCDC136Q96JN2 1154 aa18.17■□□□□ 0.5
CCDC88B-205ENST00000472524 SLC28A3Q9HAS3 691 aa18.17■□□□□ 0.5
CCDC88B-205ENST00000472524 SEC63Q9UGP8 760 aaKnown RBP18.17■□□□□ 0.5
CCDC88B-205ENST00000472524 SLC4A7Q9Y6M7 1214 aa18.17■□□□□ 0.5
CCDC88B-205ENST00000472524 SUPT20HL2P0C7V6 817 aa18.16■□□□□ 0.5
CCDC88B-205ENST00000472524 CCND2P30279 289 aa18.16■□□□□ 0.5
CCDC88B-205ENST00000472524 CCDC85BQ15834 202 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-205ENST00000472524 NFRKBQ6P4R8 1299 aa18.16■□□□□ 0.5
CCDC88B-205ENST00000472524 RPUSD2Q8IZ73 545 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-205ENST00000472524 CMTR1Q8N1G2 835 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-205ENST00000472524 SLC12A7Q9Y666 1083 aa18.16■□□□□ 0.5
CCDC88B-205ENST00000472524 CHD7Q9P2D1 2997 aa18.16■□□□□ 0.5
CCDC88B-205ENST00000472524 ZBBXA8MT70 800 aa18.15■□□□□ 0.5
CCDC88B-205ENST00000472524 RGS20O76081 388 aa18.15■□□□□ 0.5
CCDC88B-205ENST00000472524 LIFRP42702 1097 aa18.15■□□□□ 0.5
CCDC88B-205ENST00000472524 GNAQP50148 359 aa18.15■□□□□ 0.5
CCDC88B-205ENST00000472524 DEFB128Q7Z7B8 93 aa18.15■□□□□ 0.5
CCDC88B-205ENST00000472524 VSIG10LQ86VR7 867 aa18.15■□□□□ 0.5
CCDC88B-205ENST00000472524 DHX37Q8IY37 1157 aaKnown RBP18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms