RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 USP17L6PQ6QN14 398 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 NEK8Q86SG6 692 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 GPBP1Q86WP2 473 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 NDST4Q9H3R1 872 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 ZNF287Q9HBT7 754 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 MINPP1Q9UNW1 487 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 PTPN22Q9Y2R2 807 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 CAPN6Q9Y6Q1 641 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 FAM205AQ6ZU69 1335 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 IL6STP40189 918 aaPredicted RBP11.8□□□□□ -0.52
CHD3-208ENST00000470531 STAT3P40763 770 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 BTDP43251 543 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 TMEM132AQ24JP5 1023 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 CFAP221Q4G0U5 840 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 JPH2Q9BR39 696 aaPredicted RBP11.8□□□□□ -0.52
CHD3-208ENST00000470531 PCDHA4Q9UN74 947 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 PCDHA12Q9UN75 941 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 USP17L5A8MUK1 530 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 E9PMD0 336 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 MYBL2P10244 700 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 ACTN3Q08043 901 aaPredicted RBP11.8□□□□□ -0.52
CHD3-208ENST00000470531 TRIM14Q14142 442 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 CCDC121Q6ZUS5 278 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 VPS36Q86VN1 386 aa11.8□□□□□ -0.52
CHD3-208ENST00000470531 FAM84BQ96KN1 310 aaPredicted RBP11.8□□□□□ -0.52
CHD3-208ENST00000470531 NALCNQ8IZF0 1738 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 LAMA4Q16363 1823 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 ABCC6O95255 1503 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 DIP2AQ14689 1571 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 GOLGA6L10A0A0M3HER8 536 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 PALMO75781 387 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 ACTN1P12814 892 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 MAGEA9P43362 315 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 DHX9Q08211 1270 aaKnown RBP11.79□□□□□ -0.52
CHD3-208ENST00000470531 ADAM9Q13443 819 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 RPS6KA1Q15418 735 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 GLIS3Q8NEA6 775 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 TRIM58Q8NG06 486 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 CABS1Q96KC9 395 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 CXorf56Q9H5V9 222 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 BAIAP2L1Q9UHR4 511 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 ZNF335Q9H4Z2 1342 aaPredicted RBP11.79□□□□□ -0.52
CHD3-208ENST00000470531 PLEKHG2Q9H7P9 1386 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 ZNF18P17022 549 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 GRIPAP1Q4V328 841 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 PEX26Q7Z412 305 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 PPM1EQ8WY54 764 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 SCAF8Q9UPN6 1271 aaKnown RBP11.79□□□□□ -0.52
CHD3-208ENST00000470531 ATP8A1Q9Y2Q0 1164 aa11.79□□□□□ -0.52
CHD3-208ENST00000470531 LGALS16A8MUM7 142 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 CFBP00751 764 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 CSF1RP07333 972 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 ZNF211Q13398 564 aaPredicted RBP11.78□□□□□ -0.52
CHD3-208ENST00000470531 ASIC2Q16515 512 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 TPH2Q8IWU9 490 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 CCDC51Q96ER9 411 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 TMEM47Q9BQJ4 181 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 DDX47Q9H0S4 455 aaKnown RBP11.78□□□□□ -0.52
CHD3-208ENST00000470531 HOMER2Q9NSB8 354 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 DIP2BQ9P265 1576 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 ZNF804BA4D1E1 1349 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 RCCD1A6NED2 376 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 KRIT1O00522 736 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 NEBLO76041 1014 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 LDHCP07864 332 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 TROAPQ12815 778 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 PKN1Q16512 942 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 KIAA0825Q8IV33 1275 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 ANKRD42Q8N9B4 389 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 LARP4BQ92615 738 aaKnown RBP11.78□□□□□ -0.52
CHD3-208ENST00000470531 DDX12PQ92771 950 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 PYM1Q9BRP8 204 aaKnown RBP11.78□□□□□ -0.52
CHD3-208ENST00000470531 PHF20Q9BVI0 1012 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 PANK4Q9NVE7 773 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 CD2APQ9Y5K6 639 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 PRPF6O94906 941 aaKnown RBP11.78□□□□□ -0.52
CHD3-208ENST00000470531 HOXA13P31271 388 aaPredicted RBP11.78□□□□□ -0.52
CHD3-208ENST00000470531 LONP1P36776 959 aaKnown RBP11.78□□□□□ -0.52
CHD3-208ENST00000470531 CARSP49589 748 aaKnown RBP11.78□□□□□ -0.52
CHD3-208ENST00000470531 ADCY7P51828 1080 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 USP14P54578 494 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 OTUD6AQ7L8S5 288 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 IFT20Q8IY31 132 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 MYOCDQ8IZQ8 938 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 MXD3Q9BW11 206 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 SLC24A3Q9HC58 644 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 FAM169AQ9Y6X4 670 aa11.78□□□□□ -0.52
CHD3-208ENST00000470531 ATP2C1P98194 919 aaPredicted RBP11.77□□□□□ -0.52
CHD3-208ENST00000470531 MDM2Q00987 491 aaPredicted RBP11.77□□□□□ -0.52
CHD3-208ENST00000470531 FAM26FQ5R3K3 315 aa11.77□□□□□ -0.52
CHD3-208ENST00000470531 TTBK2Q6IQ55 1244 aa11.77□□□□□ -0.52
CHD3-208ENST00000470531 ARL8AQ96BM9 186 aa11.77□□□□□ -0.52
CHD3-208ENST00000470531 PSD3Q9NYI0 1048 aa11.77□□□□□ -0.52
CHD3-208ENST00000470531 RTCBQ9Y3I0 505 aaKnown RBP11.77□□□□□ -0.52
CHD3-208ENST00000470531 SPATA31A3Q5VYP0 1347 aa11.77□□□□□ -0.53
CHD3-208ENST00000470531 PDE2AO00408 941 aaPredicted RBP11.77□□□□□ -0.53
CHD3-208ENST00000470531 ZBED6P86452 979 aa11.77□□□□□ -0.53
CHD3-208ENST00000470531 SPATA4Q8NEY3 305 aa11.77□□□□□ -0.53
CHD3-208ENST00000470531 PIGOQ8TEQ8 1089 aa11.77□□□□□ -0.53
CHD3-208ENST00000470531 RBM12Q9NTZ6 932 aaKnown RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms