RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 KAT2BQ92831 832 aa28.47■■■□□ 2.15
PTCH1-210ENST00000468211 PIGSQ96S52 555 aa28.47■■■□□ 2.15
PTCH1-210ENST00000468211 MTIF3Q9H2K0 278 aaKnown RBP28.47■■■□□ 2.15
PTCH1-210ENST00000468211 NKX2-4Q9H2Z4 354 aa28.47■■■□□ 2.15
PTCH1-210ENST00000468211 PRDM12Q9H4Q4 367 aa28.47■■■□□ 2.15
PTCH1-210ENST00000468211 PCDHA1Q9Y5I3 950 aa28.47■■■□□ 2.15
PTCH1-210ENST00000468211 CYTH3O43739 400 aa28.46■■■□□ 2.15
PTCH1-210ENST00000468211 HOXA13P31271 388 aaPredicted RBP28.46■■■□□ 2.15
PTCH1-210ENST00000468211 RABGGTBP53611 331 aa28.46■■■□□ 2.15
PTCH1-210ENST00000468211 ANTXR2P58335 489 aa28.46■■■□□ 2.15
PTCH1-210ENST00000468211 HOMER1Q86YM7 354 aa28.46■■■□□ 2.15
PTCH1-210ENST00000468211 CTAGE1Q96RT6 745 aa28.46■■■□□ 2.15
PTCH1-210ENST00000468211 RIOX1Q9H6W3 641 aa28.46■■■□□ 2.15
PTCH1-210ENST00000468211 EIF3JO75822 258 aaKnown RBP28.45■■■□□ 2.14
PTCH1-210ENST00000468211 RGS20O76081 388 aa28.45■■■□□ 2.14
PTCH1-210ENST00000468211 PTPN11Q06124 597 aaPredicted RBP28.45■■■□□ 2.14
PTCH1-210ENST00000468211 TROAPQ12815 778 aa28.45■■■□□ 2.14
PTCH1-210ENST00000468211 RAB30Q15771 203 aa28.45■■■□□ 2.14
PTCH1-210ENST00000468211 IL31RAQ8NI17 732 aa28.45■■■□□ 2.14
PTCH1-210ENST00000468211 MSRAQ9UJ68 235 aa28.45■■■□□ 2.14
PTCH1-210ENST00000468211 MYOGP15173 224 aa28.44■■■□□ 2.14
PTCH1-210ENST00000468211 RALYLQ86SE5 291 aaKnown RBP28.44■■■□□ 2.14
PTCH1-210ENST00000468211 NCOA7Q8NI08 942 aa28.44■■■□□ 2.14
PTCH1-210ENST00000468211 MAP4K1Q92918 833 aa28.44■■■□□ 2.14
PTCH1-210ENST00000468211 PDCD2LQ9BRP1 358 aa28.44■■■□□ 2.14
PTCH1-210ENST00000468211 SLC4A7Q9Y6M7 1214 aa28.44■■■□□ 2.14
PTCH1-210ENST00000468211 ZBBXA8MT70 800 aa28.43■■■□□ 2.14
PTCH1-210ENST00000468211 IQCF3P0C7M6 154 aa28.43■■■□□ 2.14
PTCH1-210ENST00000468211 MYCLP12524 364 aaPredicted RBP28.43■■■□□ 2.14
PTCH1-210ENST00000468211 WTAPQ15007 396 aa28.43■■■□□ 2.14
PTCH1-210ENST00000468211 GDF6Q6KF10 455 aaPredicted RBP28.43■■■□□ 2.14
PTCH1-210ENST00000468211 MB21D2Q8IYB1 491 aaPredicted RBP28.43■■■□□ 2.14
PTCH1-210ENST00000468211 ZFP91Q96JP5 570 aaPredicted RBP28.43■■■□□ 2.14
PTCH1-210ENST00000468211 MRVI1Q9Y6F6 885 aa28.43■■■□□ 2.14
PTCH1-210ENST00000468211 PTPRSQ13332 1948 aa28.43■■■□□ 2.14
PTCH1-210ENST00000468211 RBAK-RBAKDNI3L0D1 243 aa28.42■■■□□ 2.14
PTCH1-210ENST00000468211 ADGRE1Q14246 886 aa28.42■■■□□ 2.14
PTCH1-210ENST00000468211 PTGISQ16647 500 aa28.42■■■□□ 2.14
PTCH1-210ENST00000468211 IGDCC4Q8TDY8 1250 aa28.42■■■□□ 2.14
PTCH1-210ENST00000468211 EMID1Q96A84 441 aaPredicted RBP28.42■■■□□ 2.14
PTCH1-210ENST00000468211 RBM8AQ9Y5S9 174 aaKnown RBP28.42■■■□□ 2.14
PTCH1-210ENST00000468211 SPTBN5Q9NRC6 3674 aaKnown RBP28.41■■■□□ 2.14
PTCH1-210ENST00000468211 ERICH2A1L162 156 aa28.41■■■□□ 2.14
PTCH1-210ENST00000468211 PITPNM1O00562 1244 aa28.41■■■□□ 2.14
PTCH1-210ENST00000468211 CASTP20810 708 aaKnown RBP28.41■■■□□ 2.14
PTCH1-210ENST00000468211 COL9A3Q14050 684 aaPredicted RBP28.41■■■□□ 2.14
PTCH1-210ENST00000468211 PGM5Q15124 567 aa28.41■■■□□ 2.14
PTCH1-210ENST00000468211 TMEM67Q5HYA8 995 aa28.41■■■□□ 2.14
PTCH1-210ENST00000468211 MAP3K20Q9NYL2 800 aaKnown RBP28.41■■■□□ 2.14
PTCH1-210ENST00000468211 DOCK5Q9H7D0 1870 aa28.4■■■□□ 2.14
PTCH1-210ENST00000468211 SORBS3O60504 671 aa28.4■■■□□ 2.14
PTCH1-210ENST00000468211 PFKMP08237 780 aa28.4■■■□□ 2.14
PTCH1-210ENST00000468211 VSIG10LQ86VR7 867 aa28.4■■■□□ 2.14
PTCH1-210ENST00000468211 SESTD1Q86VW0 696 aa28.4■■■□□ 2.14
PTCH1-210ENST00000468211 RETREG2Q8NC44 543 aa28.4■■■□□ 2.14
PTCH1-210ENST00000468211 SLC28A3Q9HAS3 691 aa28.4■■■□□ 2.14
PTCH1-210ENST00000468211 PRDM6Q9NQX0 595 aa28.4■■■□□ 2.14
PTCH1-210ENST00000468211 NOD1Q9Y239 953 aa28.4■■■□□ 2.14
PTCH1-210ENST00000468211 PNMA6FA0A0J9YX94 578 aa28.39■■■□□ 2.14
PTCH1-210ENST00000468211 ZNF286BP0CG31 522 aa28.39■■■□□ 2.14
PTCH1-210ENST00000468211 ATP2A2P16615 1042 aaKnown RBP28.39■■■□□ 2.14
PTCH1-210ENST00000468211 RFC2P35250 354 aa28.39■■■□□ 2.14
PTCH1-210ENST00000468211 SP2Q02086 613 aa28.39■■■□□ 2.14
PTCH1-210ENST00000468211 DGKDQ16760 1214 aa28.39■■■□□ 2.14
PTCH1-210ENST00000468211 PIBF1Q8WXW3 757 aa28.39■■■□□ 2.14
PTCH1-210ENST00000468211 DHX38Q92620 1227 aaKnown RBP28.39■■■□□ 2.14
PTCH1-210ENST00000468211 GPKOWQ92917 476 aaPredicted RBP eCLIP28.39■■■□□ 2.14
PTCH1-210ENST00000468211 GAS2L1Q99501 681 aaPredicted RBP28.39■■■□□ 2.14
PTCH1-210ENST00000468211 PSEN2P49810 448 aa28.38■■■□□ 2.13
PTCH1-210ENST00000468211 LAMC2Q13753 1193 aa28.38■■■□□ 2.13
PTCH1-210ENST00000468211 GPNMBQ14956 572 aa28.38■■■□□ 2.13
PTCH1-210ENST00000468211 SART3Q15020 963 aaKnown RBP28.38■■■□□ 2.13
PTCH1-210ENST00000468211 FCHSD1Q86WN1 690 aa28.38■■■□□ 2.13
PTCH1-210ENST00000468211 DHX37Q8IY37 1157 aaKnown RBP28.38■■■□□ 2.13
PTCH1-210ENST00000468211 PPTC7Q8NI37 304 aa28.38■■■□□ 2.13
PTCH1-210ENST00000468211 ALG1Q9BT22 464 aa28.38■■■□□ 2.13
PTCH1-210ENST00000468211 MYL10Q9BUA6 226 aa28.38■■■□□ 2.13
PTCH1-210ENST00000468211 HDAC6Q9UBN7 1215 aa28.38■■■□□ 2.13
PTCH1-210ENST00000468211 PCDHA11Q9Y5I1 949 aa28.38■■■□□ 2.13
PTCH1-210ENST00000468211 GCOM1H8Y6P7 765 aaPredicted RBP28.37■■■□□ 2.13
PTCH1-210ENST00000468211 POLR2MP0CAP2 368 aa28.37■■■□□ 2.13
PTCH1-210ENST00000468211 BFSP2Q13515 415 aa28.37■■■□□ 2.13
PTCH1-210ENST00000468211 MYSM1Q5VVJ2 828 aa28.37■■■□□ 2.13
PTCH1-210ENST00000468211 CATIPQ7Z7H3 387 aa28.37■■■□□ 2.13
PTCH1-210ENST00000468211 SAMD3Q8N6K7 520 aa28.37■■■□□ 2.13
PTCH1-210ENST00000468211 PPM1EQ8WY54 764 aa28.37■■■□□ 2.13
PTCH1-210ENST00000468211 LY9Q9HBG7 655 aa28.37■■■□□ 2.13
PTCH1-210ENST00000468211 REV3LO60673 3130 aa28.36■■■□□ 2.13
PTCH1-210ENST00000468211 HAS3O00219 553 aa28.36■■■□□ 2.13
PTCH1-210ENST00000468211 F2P00734 622 aa28.36■■■□□ 2.13
PTCH1-210ENST00000468211 HSDL1Q3SXM5 330 aa28.36■■■□□ 2.13
PTCH1-210ENST00000468211 CELF3Q5SZQ8 465 aaKnown RBP28.36■■■□□ 2.13
PTCH1-210ENST00000468211 FTOQ9C0B1 505 aaKnown RBP eCLIP28.36■■■□□ 2.13
PTCH1-210ENST00000468211 LSG1Q9H089 658 aaKnown RBP28.36■■■□□ 2.13
PTCH1-210ENST00000468211 BCAS3Q9H6U6 928 aa28.36■■■□□ 2.13
PTCH1-210ENST00000468211 GTF2IRD1Q9UHL9 959 aa28.36■■■□□ 2.13
PTCH1-210ENST00000468211 GGPS1O95749 300 aa28.35■■■□□ 2.13
PTCH1-210ENST00000468211 HOXD8P13378 290 aaPredicted RBP28.35■■■□□ 2.13
PTCH1-210ENST00000468211 MFSD10Q14728 455 aa28.35■■■□□ 2.13
PTCH1-210ENST00000468211 KIAA0753Q2KHM9 967 aa28.35■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms