RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 PTPN11Q06124 597 aaPredicted RBP22.06■■□□□ 1.12
COL7A1-207ENST00000467985 ARHGAP1Q07960 439 aa22.06■■□□□ 1.12
COL7A1-207ENST00000467985 NBPF20Q3BBV1 942 aa22.06■■□□□ 1.12
COL7A1-207ENST00000467985 ZNF697Q5TEC3 545 aa22.06■■□□□ 1.12
COL7A1-207ENST00000467985 PSRC1Q6PGN9 363 aaPredicted RBP22.06■■□□□ 1.12
COL7A1-207ENST00000467985 VSIG10LQ86VR7 867 aa22.06■■□□□ 1.12
COL7A1-207ENST00000467985 DDX41Q9UJV9 622 aaKnown RBP22.06■■□□□ 1.12
COL7A1-207ENST00000467985 SLC12A7Q9Y666 1083 aa22.06■■□□□ 1.12
COL7A1-207ENST00000467985 MRVI1Q9Y6F6 885 aa22.06■■□□□ 1.12
COL7A1-207ENST00000467985 MYCLP12524 364 aaPredicted RBP22.05■■□□□ 1.12
COL7A1-207ENST00000467985 LAMC2Q13753 1193 aa22.05■■□□□ 1.12
COL7A1-207ENST00000467985 PGM5Q15124 567 aa22.05■■□□□ 1.12
COL7A1-207ENST00000467985 SGMS1Q86VZ5 419 aa22.05■■□□□ 1.12
COL7A1-207ENST00000467985 AFG1LQ8WV93 481 aa22.05■■□□□ 1.12
COL7A1-207ENST00000467985 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.05■■□□□ 1.122e-8■□□□□ 8.3
COL7A1-207ENST00000467985 NOC4LQ9BVI4 516 aaKnown RBP22.05■■□□□ 1.12
COL7A1-207ENST00000467985 IL23AQ9NPF7 189 aa22.05■■□□□ 1.12
COL7A1-207ENST00000467985 STXBP5LQ9Y2K9 1186 aa22.05■■□□□ 1.12
COL7A1-207ENST00000467985 MMP3P08254 477 aa22.04■■□□□ 1.12
COL7A1-207ENST00000467985 TGFB3P10600 412 aa22.04■■□□□ 1.12
COL7A1-207ENST00000467985 CASTP20810 708 aaKnown RBP22.04■■□□□ 1.12
COL7A1-207ENST00000467985 CCND2P30279 289 aa22.04■■□□□ 1.12
COL7A1-207ENST00000467985 KRT32Q14532 448 aa22.04■■□□□ 1.12
COL7A1-207ENST00000467985 DGKDQ16760 1214 aa22.04■■□□□ 1.12
COL7A1-207ENST00000467985 TSGA10IPQ3SY00 556 aa22.04■■□□□ 1.12
COL7A1-207ENST00000467985 FAM47CQ5HY64 1035 aa22.04■■□□□ 1.12
COL7A1-207ENST00000467985 TMEM240Q5SV17 173 aa22.04■■□□□ 1.12
COL7A1-207ENST00000467985 SYNE3Q6ZMZ3 975 aa22.04■■□□□ 1.12
COL7A1-207ENST00000467985 C16orf59Q7L2K0 433 aa22.04■■□□□ 1.12
COL7A1-207ENST00000467985 PIBF1Q8WXW3 757 aa22.04■■□□□ 1.12
COL7A1-207ENST00000467985 TRMT13Q9NUP7 481 aaKnown RBP22.04■■□□□ 1.12
COL7A1-207ENST00000467985 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.03■■□□□ 1.12
COL7A1-207ENST00000467985 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.03■■□□□ 1.12
COL7A1-207ENST00000467985 STAM2O75886 525 aa22.03■■□□□ 1.12
COL7A1-207ENST00000467985 FCHSD1Q86WN1 690 aa22.03■■□□□ 1.12
COL7A1-207ENST00000467985 DHX37Q8IY37 1157 aaKnown RBP22.03■■□□□ 1.12
COL7A1-207ENST00000467985 PPTC7Q8NI37 304 aa22.03■■□□□ 1.12
COL7A1-207ENST00000467985 CUL5Q93034 780 aa22.03■■□□□ 1.12
COL7A1-207ENST00000467985 NEK1Q96PY6 1258 aa22.03■■□□□ 1.12
COL7A1-207ENST00000467985 MTIF3Q9H2K0 278 aaKnown RBP22.03■■□□□ 1.12
COL7A1-207ENST00000467985 TMEM265A0A087WTH1 108 aa22.02■■□□□ 1.12
COL7A1-207ENST00000467985 RPUSD2Q8IZ73 545 aaKnown RBP22.02■■□□□ 1.12
COL7A1-207ENST00000467985 SRBD1Q8N5C6 995 aaKnown RBP22.02■■□□□ 1.12
COL7A1-207ENST00000467985 FANCBQ8NB91 859 aa22.02■■□□□ 1.12
COL7A1-207ENST00000467985 GTF3C3Q9Y5Q9 886 aa22.02■■□□□ 1.12
COL7A1-207ENST00000467985 CDH23Q9H251 3354 aa22.02■■□□□ 1.12
COL7A1-207ENST00000467985 FRMPD4Q14CM0 1322 aa22.02■■□□□ 1.12
COL7A1-207ENST00000467985 PIK3CDO00329 1044 aa22.01■■□□□ 1.11
COL7A1-207ENST00000467985 RGS20O76081 388 aa22.01■■□□□ 1.11
COL7A1-207ENST00000467985 PLEKHA8P1O95397 391 aa22.01■■□□□ 1.11
COL7A1-207ENST00000467985 HMGB1P09429 215 aaKnown RBP22.01■■□□□ 1.11
COL7A1-207ENST00000467985 GNPTABQ3T906 1256 aa22.01■■□□□ 1.11
COL7A1-207ENST00000467985 RASIP1Q5U651 963 aa22.01■■□□□ 1.11
COL7A1-207ENST00000467985 ZNF365Q70YC5 407 aa22.01■■□□□ 1.11
COL7A1-207ENST00000467985 DHX32Q7L7V1 743 aaKnown RBP22.01■■□□□ 1.11
COL7A1-207ENST00000467985 KATNAL1Q9BW62 490 aa22.01■■□□□ 1.11
COL7A1-207ENST00000467985 LRRC2Q9BYS8 371 aa22.01■■□□□ 1.11
COL7A1-207ENST00000467985 CHD9Q3L8U1 2897 aa22.01■■□□□ 1.11
COL7A1-207ENST00000467985 UMODL1Q5DID0 1318 aa22.01■■□□□ 1.11
COL7A1-207ENST00000467985 FGBP02675 491 aa22■■□□□ 1.11
COL7A1-207ENST00000467985 ACRP10323 421 aa22■■□□□ 1.11
COL7A1-207ENST00000467985 CCL23P55773 120 aa22■■□□□ 1.11
COL7A1-207ENST00000467985 EXOSC10Q01780 885 aaKnown RBP22■■□□□ 1.11
COL7A1-207ENST00000467985 COL9A3Q14050 684 aaPredicted RBP22■■□□□ 1.11
COL7A1-207ENST00000467985 XRRA1Q6P2D8 792 aa22■■□□□ 1.11
COL7A1-207ENST00000467985 IL31RAQ8NI17 732 aa22■■□□□ 1.11
COL7A1-207ENST00000467985 SMARCC2Q8TAQ2 1214 aa22■■□□□ 1.11
COL7A1-207ENST00000467985 HERVK_113Q902F9 699 aa22■■□□□ 1.11
COL7A1-207ENST00000467985 WNT8AQ9H1J5 351 aa22■■□□□ 1.11
COL7A1-207ENST00000467985 NOD1Q9Y239 953 aa22■■□□□ 1.11
COL7A1-207ENST00000467985 PITPNM1O00562 1244 aa21.99■■□□□ 1.11
COL7A1-207ENST00000467985 PPFIA4O75335 1185 aa21.99■■□□□ 1.11
COL7A1-207ENST00000467985 PFKMP08237 780 aa21.99■■□□□ 1.11
COL7A1-207ENST00000467985 CYP2C9P11712 490 aa21.99■■□□□ 1.11
COL7A1-207ENST00000467985 RXRAP19793 462 aa21.99■■□□□ 1.11
COL7A1-207ENST00000467985 CELF3Q5SZQ8 465 aaKnown RBP21.99■■□□□ 1.11
COL7A1-207ENST00000467985 MYSM1Q5VVJ2 828 aa21.99■■□□□ 1.11
COL7A1-207ENST00000467985 TMTC3Q6ZXV5 915 aa21.99■■□□□ 1.11
COL7A1-207ENST00000467985 SESTD1Q86VW0 696 aa21.99■■□□□ 1.11
COL7A1-207ENST00000467985 MICU3Q86XE3 530 aa21.99■■□□□ 1.11
COL7A1-207ENST00000467985 SEMA6BQ9H3T3 888 aa21.99■■□□□ 1.11
COL7A1-207ENST00000467985 RBM28Q9NW13 759 aaKnown RBP21.99■■□□□ 1.11
COL7A1-207ENST00000467985 GGPS1O95749 300 aa21.98■■□□□ 1.11
COL7A1-207ENST00000467985 HOXD8P13378 290 aaPredicted RBP21.98■■□□□ 1.11
COL7A1-207ENST00000467985 RFC2P35250 354 aa21.98■■□□□ 1.11
COL7A1-207ENST00000467985 CHMP4BP1P59074 171 aa21.98■■□□□ 1.11
COL7A1-207ENST00000467985 BFSP2Q13515 415 aa21.98■■□□□ 1.11
COL7A1-207ENST00000467985 APOA5Q6Q788 366 aa21.98■■□□□ 1.11
COL7A1-207ENST00000467985 RASEFQ8IZ41 740 aa21.98■■□□□ 1.11
COL7A1-207ENST00000467985 CCDC155Q8N6L0 562 aa21.98■■□□□ 1.11
COL7A1-207ENST00000467985 KAT2BQ92831 832 aa21.98■■□□□ 1.11
COL7A1-207ENST00000467985 FAM161BQ96MY7 647 aa21.98■■□□□ 1.11
COL7A1-207ENST00000467985 SPATA33Q96N06 139 aa21.98■■□□□ 1.11
COL7A1-207ENST00000467985 GUCD1Q96NT3 240 aa21.98■■□□□ 1.11
COL7A1-207ENST00000467985 PSTPIP2Q9H939 334 aa21.98■■□□□ 1.11
COL7A1-207ENST00000467985 MYH7BA7E2Y1 1941 aa21.98■■□□□ 1.11
COL7A1-207ENST00000467985 F2P00734 622 aa21.97■■□□□ 1.11
COL7A1-207ENST00000467985 UBA1P22314 1058 aaKnown RBP21.97■■□□□ 1.11
COL7A1-207ENST00000467985 PTGISQ16647 500 aa21.97■■□□□ 1.11
COL7A1-207ENST00000467985 USP17L6PQ6QN14 398 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms